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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Sme2.5_02771.1_g00010.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family |
C3H |
Protein Properties |
Length: 368aa MW: 40300 Da PI: 8.7926 |
Description |
C3H family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Sme2.5_02771.1_g00010.1 | genome | EGD | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | zf-CCCH | 37.1 | 5.3e-12 | 16 | 42 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS
zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27
++ + C++++r+G C yG++C+F+H++
Sme2.5_02771.1_g00010.1 16 PGVPDCSYYMRNGSCGYGPNCRFNHPR 42
5789*********************96 PP
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2 | zf-CCCH | 38.8 | 1.5e-12 | 64 | 89 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS
zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27
+++ C++++rtGtCk+G +CkF+H++
Sme2.5_02771.1_g00010.1 64 GEPTCQYYLRTGTCKFGVSCKFHHPR 89
5789********************96 PP
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3 | zf-CCCH | 34.6 | 3.3e-11 | 111 | 135 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS
zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27
+ +C ++++tG+Ck+G +CkF+H++
Sme2.5_02771.1_g00010.1 111 ETECTYYLKTGHCKFGITCKFHHPQ 135
679********************97 PP
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4 | zf-CCCH | 38.1 | 2.7e-12 | 266 | 291 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS
zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27
++++C+++ +tG Ck+G++CkF+H+p
Sme2.5_02771.1_g00010.1 266 GQSICQYYVKTGDCKFGSSCKFHHPP 291
7899********************97 PP
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Protein Features
? help Back to Top |
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Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
SMART | SM00356 | 5.7E-7 | 15 | 42 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.868 | 15 | 43 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.8E-9 | 17 | 42 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 4.19E-6 | 19 | 43 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 3.4E-5 | 21 | 42 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 6.8E-5 | 62 | 89 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.831 | 62 | 90 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 5.1E-10 | 64 | 89 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 4.58E-6 | 65 | 90 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 6.7E-5 | 68 | 89 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.408 | 108 | 136 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 4.2E-5 | 108 | 135 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 6.02E-6 | 110 | 136 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.1E-8 | 111 | 135 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 5.1E-4 | 114 | 134 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 3.9E-6 | 264 | 291 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.854 | 264 | 292 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.3E-9 | 266 | 291 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.7E-6 | 267 | 292 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 7.2E-6 | 268 | 290 | IPR000571 | Zinc finger, CCCH-type |
Sequence ? help Back to Top |
Protein Sequence Length: 368 aa
Download sequence Send
to blast |
MQKLGLFGRE IYPERPGVPD CSYYMRNGSC GYGPNCRFNH PRDRDHGYDG KMQLGGVEFP 60 ERMGEPTCQY YLRTGTCKFG VSCKFHHPRN FDGTLSNIPL NSYGYPLRTG ETECTYYLKT 120 GHCKFGITCK FHHPQPAGIS VPAPARPFYP TVQSLPAPPE EYNSALTGLR VARPPLLPGS 180 YVPSAYGPVL LHPGVVTIPN WSPYSGPVSP ALSPGAQPSA GLTSVYGISQ LASSTHAFTG 240 PYLPLPPAAS PSSKTQKEKS FPERPGQSIC QYYVKTGDCK FGSSCKFHHP PDWIASRTNC 300 AFSPLGLPLR PVLMCYRFVI NEAALSVSFS FIDNREILEG PSTVLKLVDN RPASLVISPY 360 TARLFSAT
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | HG975521 | 1e-138 | HG975521.1 Solanum lycopersicum chromosome ch09, complete genome. |