PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum

Family

GRAS

Protein Properties

Length: 737aa MW: 83095.8 Da PI: 5.8299

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sme2.5_02745.1_g00001.1	genome	EGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	388.1	1e-118	365	734	2	374
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsev 87 ++ L+ cA+av+++d + a+++L+++++++sp+gd mqRla+yf+++L+ar+a+s++++y l + +ts +++l+a++lf + Sme2.5_02745.1_g00001.1 365 RTILTLCAQAVAADDRRTANEFLKQIRQNSSPTGDGMQRLAHYFANGLEARMAGSGTQIYTDLISMPTS---AADVLKAYQLFLAA 447 67899********************************************************999998...9********* PP GRAS 88 sPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAee 171 +P+ k+s++ N++I++ +e++++vHiiDf+i++G+QWp+++q L+sRp+gpp+lRiTg++ p++g +e++eetg+rLa++Ae+ Sme2.5_02745.1_g00001.1 448 CPFRKLSNFFSNKTIMNLAETASTVHIIDFGIMYGFQWPCFIQRLSSRPGGPPKLRITGIDFPNPGfrPAERVEETGKRLADYAES 533 *************************************************************9**************** PP GRAS 172 lgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerf 257 ++vpfef + +a+++e++++e+L+++++E+l+Vn++++ +llde+v ++s+rd vL+l+++l+P+v + + +n++ F +rf Sme2.5_02745.1_g00001.1 534 FNVPFEFIA-IAQKWETIKVEDLKIQKDEVLVVNCMYRFRNLLDETVMVNSPRDIVLNLIRKLNPDVYIQGIVNGAYNAPFFITRF 618 *****.7*********************************************************************** PP GRAS 258 lealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrk 343 eal +ys++fd+lea++pre er vE+ ++gre++nvvace aer+er et+++W+ r +aGF+++pl+e++ ak ++ Sme2.5_02745.1_g00001.1 619 REALFHYSSVFDMLEANIPREIPERLLVEKLIFGREAMNVVACEAAERIERPETYKQWQVRNIRAGFRQLPLNEEILRIAKDRVKA 704 ********************************************************************************** PP GRAS 344 vksdgyrveeesgslvlgWkdrpLvsvSaWr 374 +++d + ++ + ++l++gWk+r ++++S W+ Sme2.5_02745.1_g00001.1 705 YHKD-FVIDVDGHWLLQGWKGRIMFAASTWK 734 77.*************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	68.326	338	715	IPR005202	Transcription factor GRAS
Pfam	PF03514	3.5E-116	365	734	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 737 aa Download sequence Send to blast
MVMDCRNYKG LYDVTSGIQL KDEDDDAKPL FQDLNLINNL RVSDVFVERN PKPDGLVPSA 60 IDNSHEDYDF SDCVLKYISQ MLMEENIEEK ACMFQESAAL QAAERSFYEV IGEKYPPSTN 120 QKILDFGQDG HYVVDSSSNY YSCGSDVTDG LLCPNWNPDL GDTDSSHTQQ FPVDSAFASM 180 TTSQSSHSSP SSSGTVTDAH VDSPVSSIQI PDIFSDSESI MQFKKGVEEA SKFLPIGNSL 240 LLDVRYNVVV KEDNENGKDA KVENHGKQKS PDGARRRKNI HHDDVYVTEE RSNKQSAVFS 300 ESTVRSDLFD KVLLCSGGRN ESALRESWQA VSSKHAPENV LTKGSNGRKS RGKKQGGKRD 360 TVDLRTILTL CAQAVAADDR RTANEFLKQI RQNSSPTGDG MQRLAHYFAN GLEARMAGSG 420 TQIYTDLISM PTSAADVLKA YQLFLAACPF RKLSNFFSNK TIMNLAETAS TVHIIDFGIM 480 YGFQWPCFIQ RLSSRPGGPP KLRITGIDFP NPGFRPAERV EETGKRLADY AESFNVPFEF 540 IAIAQKWETI KVEDLKIQKD EVLVVNCMYR FRNLLDETVM VNSPRDIVLN LIRKLNPDVY 600 IQGIVNGAYN APFFITRFRE ALFHYSSVFD MLEANIPREI PERLLVEKLI FGREAMNVVA 660 CEAAERIERP ETYKQWQVRN IRAGFRQLPL NEEILRIAKD RVKAYHKDFV IDVDGHWLLQ 720 GWKGRIMFAA STWKGAF

Sequence ? help Back to Top

Protein Sequence Length: 737 aa Download sequence Send to blast

MVMDCRNYKG LYDVTSGIQL KDEDDDAKPL FQDLNLINNL RVSDVFVERN PKPDGLVPSA  60
IDNSHEDYDF SDCVLKYISQ MLMEENIEEK ACMFQESAAL QAAERSFYEV IGEKYPPSTN  120
QKILDFGQDG HYVVDSSSNY YSCGSDVTDG LLCPNWNPDL GDTDSSHTQQ FPVDSAFASM  180
TTSQSSHSSP SSSGTVTDAH VDSPVSSIQI PDIFSDSESI MQFKKGVEEA SKFLPIGNSL  240
LLDVRYNVVV KEDNENGKDA KVENHGKQKS PDGARRRKNI HHDDVYVTEE RSNKQSAVFS  300
ESTVRSDLFD KVLLCSGGRN ESALRESWQA VSSKHAPENV LTKGSNGRKS RGKKQGGKRD  360
TVDLRTILTL CAQAVAADDR RTANEFLKQI RQNSSPTGDG MQRLAHYFAN GLEARMAGSG  420
TQIYTDLISM PTSAADVLKA YQLFLAACPF RKLSNFFSNK TIMNLAETAS TVHIIDFGIM  480
YGFQWPCFIQ RLSSRPGGPP KLRITGIDFP NPGFRPAERV EETGKRLADY AESFNVPFEF  540
IAIAQKWETI KVEDLKIQKD EVLVVNCMYR FRNLLDETVM VNSPRDIVLN LIRKLNPDVY  600
IQGIVNGAYN APFFITRFRE ALFHYSSVFD MLEANIPREI PERLLVEKLI FGREAMNVVA  660
CEAAERIERP ETYKQWQVRN IRAGFRQLPL NEEILRIAKD RVKAYHKDFV IDVDGHWLLQ  720
GWKGRIMFAA STWKGAF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	3e-55	348	733	3	378	Protein SCARECROW
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in plant development. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975443	0.0	HG975443.1 Solanum pennellii chromosome ch04, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015073886.1	0.0	scarecrow-like protein 14
Swissprot	Q9XE58	0.0	SCL14_ARATH; Scarecrow-like protein 14
TrEMBL	A0A3Q7G0P3	0.0	A0A3Q7G0P3_SOLLC; Uncharacterized protein
STRING	PGSC0003DMT400016258	0.0	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA276	24	191

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07530.1	0.0	SCARECROW-like 14

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]