PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Sme2.5_02737.1_g00005.1

Organism

Solanum melongena

Taxonomic ID

4111

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum

Family

bHLH

Protein Properties

Length: 154aa MW: 18223.8 Da PI: 9.7523

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sme2.5_02737.1_g00005.1	genome	EGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	35.3	2.1e-11	60	111	2	55
HHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 + h +Er RR+++ + +++L ++lP + +++K s + ++Av+YIk+L+ Sme2.5_02737.1_g00005.1 60 KILHRDVERHRRQNMANLYATLISHLPYeS---SKGKRSMRDHMQEAVNYIKHLE 111 66799*********************66...******************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	2.38E-7	56	115	No hit	No description
SuperFamily	SSF47459	1.96E-13	57	124	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	12.811	58	110	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.2E-8	60	111	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	8.2E-9	61	125	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 154 aa Download sequence Send to blast
MDCLSEIFSS KKIKDDDQQL IQIPSTPCQP YHQDLATNDL NYKRKRSTSA LIRKNSVQKK 60 ILHRDVERHR RQNMANLYAT LISHLPYESS KGKRSMRDHM QEAVNYIKHL ENNIKELEIK 120 RKELEDLALC SSKEDIRLRC GDFDQRKYFT LKSA

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975443	6e-46	HG975443.1 Solanum pennellii chromosome ch04, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006350425.1	1e-74	PREDICTED: transcription factor bHLH118-like
TrEMBL	M1APG9	4e-73	M1APG9_SOLTU; Uncharacterized protein
STRING	PGSC0003DMT400027293	7e-74	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA598	24	109

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G51780.1	6e-15	bHLH family protein