PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_02724.1_g00001.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family M-type_MADS
Protein Properties Length: 194aa    MW: 22111.5 Da    PI: 9.6672
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_02724.1_g00001.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF51.51.3e-161862549
                             SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
                   SRF-TF  5 nksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                             ++   qv+fskRr  ++KKA+EL+++C+ae+a++ + + +++y +
  Sme2.5_02724.1_g00001.1 18 DEKSLQVSFSKRRGCLFKKANELCIMCGAEIAIVGYTPGNNVYSF 62
                             566679*************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004323.6E-20665IPR002100Transcription factor, MADS-box
PROSITE profilePS5006619.904666IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.44E-21780IPR002100Transcription factor, MADS-box
CDDcd001203.18E-25765No hitNo description
PRINTSPR004048.0E-13828IPR002100Transcription factor, MADS-box
PfamPF003194.2E-191562IPR002100Transcription factor, MADS-box
PRINTSPR004048.0E-132843IPR002100Transcription factor, MADS-box
PRINTSPR004048.0E-134364IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 194 aa     Download sequence    Send to blast
MPRRGNGRKK VEIVKIPDEK SLQVSFSKRR GCLFKKANEL CIMCGAEIAI VGYTPGNNVY  60
SFGPPCVNRI VDRFLAGSPP QDPTEQLIES YRKERIYNAN KEVNEKQEML DMEMKHREEL  120
QAIKRDKWWE APIEDLNTPQ LKQMEMALEV IKEGLRKEAQ RQQMINGAIF PFSILGSALT  180
PPKTSSSSNG RNAK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019234721.11e-62PREDICTED: agamous-like MADS-box protein AGL62
TrEMBLA0A1J6L5Z83e-61A0A1J6L5Z8_NICAT; Agamous-like mads-box protein agl62
STRINGXP_009630756.18e-59(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20424223
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.17e-39AGAMOUS-like 62