PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_02712.1_g00007.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family HSF
Protein Properties Length: 331aa    MW: 36210.5 Da    PI: 4.9199
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_02712.1_g00007.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind116.31.8e-36251162102
                              HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXX CS
             HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFk 87 
                              Fl+k+y++++d++++elisw+e+g++f+v+++ efa+++LpkyFkh+nf+SFvRQLn+YgF+kv  ++         weF+++ F+
  Sme2.5_02712.1_g00007.1  25 FLTKTYQLVDDPAMDELISWNEDGTTFIVWKPAEFARDLLPKYFKHNNFSSFVRQLNTYGFRKVVPDR---------WEFANECFR 101
                              9*****************************************************************99.........********* PP

                              XXXXXXXXXXXXXXX CS
             HSF_DNA-bind  88 kgkkellekikrkks 102
                              +g+k ll++i+r+k 
  Sme2.5_02712.1_g00007.1 102 RGEKGLLRDIQRRKI 116
                              ************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004158.9E-5921114IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.103.0E-3822114IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467855.44E-3622114IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000567.6E-212548IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004473.2E-3225114IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000567.6E-216375IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406488IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000567.6E-217688IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    Send to blast
MVPSSVEQTG ESAVGENQRS LPTPFLTKTY QLVDDPAMDE LISWNEDGTT FIVWKPAEFA  60
RDLLPKYFKH NNFSSFVRQL NTYGFRKVVP DRWEFANECF RRGEKGLLRD IQRRKISPAG  120
TAVTAVAPAV PTVNAAQAVT VAVAAPAVRV VSSSNSGDEQ VLSSNSSPAA TAAAAAATLR  180
TTTCTTTPEL LEENERLRKE NAQLNQELNR LRILCNNVYN LMSNFTMNPA DMPAGIPEGR  240
ALELLRTEQV AAEVDGVATL TAAESSGVKA EEDISPRLFG VSIGVKRVRR SNEEESKRVQ  300
DQVQPHGSDV KSEPLDSGSP HDDQPWIDRL G
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B4e-272511429129Heat shock factor protein 1
5d5v_B4e-272511429129Heat shock factor protein 1
5d5v_D4e-272511429129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00432DAPTransfer from AT4G11660Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009760921.10.0PREDICTED: heat stress transcription factor B-2b
RefseqXP_016444574.10.0PREDICTED: heat stress transcription factor B-2b-like isoform X1
SwissprotQ9T0D31e-103HFB2B_ARATH; Heat stress transcription factor B-2b
TrEMBLA0A1S3XXH50.0A0A1S3XXH5_TOBAC; heat stress transcription factor B-2b-like isoform X1
TrEMBLA0A1U7V7G90.0A0A1U7V7G9_NICSY; heat stress transcription factor B-2b
STRINGXP_009760921.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21822460
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11660.12e-84HSF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]