PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_02703.1_g00006.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family C3H
Protein Properties Length: 309aa    MW: 32521 Da    PI: 9.1567
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_02703.1_g00006.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH28.82.1e-09113138227
                              -S---SGGGGTS--TTTTT-SS-SSS CS
                  zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                              kt+lC+ f     Ck+Gd+C++aHg+
  Sme2.5_02703.1_g00006.1 113 KTKLCNKFNTAEGCKFGDKCNYAHGE 138
                              9***********************96 PP
2zf-CCCH37.15.1e-12277300226
                              -S---SGGGGTS--TTTTT-SS-SS CS
                  zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                              kt+lC++fa+ G C +Gd+C+FaHg
  Sme2.5_02703.1_g00006.1 277 KTKLCDNFAK-GSCTFGDKCHFAHG 300
                              9*********.*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF146080.816175No hitNo description
Gene3DG3DSA:4.10.1000.107.7E-46175IPR000571Zinc finger, CCCH-type
PROSITE profilePS501037.1796578IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.68E-8110141IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.2E-12110141IPR000571Zinc finger, CCCH-type
SMARTSM003566.6E-4111138IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.023111139IPR000571Zinc finger, CCCH-type
PfamPF006428.9E-7113138IPR000571Zinc finger, CCCH-type
SuperFamilySSF547912.48E-15177253IPR004088K Homology domain, type 1
SMARTSM003229.6E-13181251IPR004087K Homology domain
PROSITE profilePS5008414.634182246IPR004088K Homology domain, type 1
Gene3DG3DSA:3.30.1370.102.5E-16182252IPR004088K Homology domain, type 1
PfamPF000138.4E-12184248IPR004088K Homology domain, type 1
CDDcd001053.48E-14184246No hitNo description
SuperFamilySSF902291.7E-8274305IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.8E-15274306IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.061275302IPR000571Zinc finger, CCCH-type
SMARTSM003562.1E-7275301IPR000571Zinc finger, CCCH-type
PfamPF006421.5E-9277300IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    Send to blast
MDFRKRSRSD AGANVNGDVK KYKPGIVVDI LMTVTHDILL ILRLAVGEVN FGNQFSLFSN  60
NTAGCPFGES CHFLHYVPGG YSAVAQMMKL TPAPSLRNAA APPNSNGNAS ALKTKLCNKF  120
NTAEGCKFGD KCNYAHGEWE IGKPIIPSQE DPRAMGFGSM PGRFGGRMEP AVSGPAASFG  180
TSATAKISVD ASLAGAIIGK GGVNSKQICR QTGAKLAIRD HETDANLRNI ELEGTFEQIS  240
QASAMVRELI NSLGPIGGPG RTHGNPGGPA PPINNLKTKL CDNFAKGSCT FGDKCHFAHG  300
AAELRKTGV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2442860.0AC244286.4 Solanum lycopersicum strain Heinz 1706 chromosome 10 clone hba-20a14 map 10, complete sequence.
GenBankHG9754490.0HG975449.1 Solanum pennellii chromosome ch10, complete genome.
GenBankHG9755220.0HG975522.1 Solanum lycopersicum chromosome ch10, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006351343.10.0PREDICTED: zinc finger CCCH domain-containing protein 14
SwissprotQ7F8R02e-86C3H14_ORYSJ; Zinc finger CCCH domain-containing protein 14
TrEMBLM1C6S20.0M1C6S2_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000609570.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8452498
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06770.12e-67C3H family protein