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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Sme2.5_02680.1_g00003.1 |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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| Family |
AP2 |
| Protein Properties |
Length: 466aa MW: 51338.6 Da PI: 6.3658 |
| Description |
AP2 family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Sme2.5_02680.1_g00003.1 | genome | EGD | View CDS |
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| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | AP2 | 56.8 | 5.6e-18 | 137 | 186 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
s+y+GV++++++grW+++I+d + k+++lg f+ta+ Aa+a+++a++k++g
Sme2.5_02680.1_g00003.1 137 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAYAAARAYDRAALKFRG 186
78*******************......55************************998 PP
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| 2 | AP2 | 42.8 | 1.3e-13 | 229 | 279 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpseng...krkrfslgkfgtaeeAakaaiaarkkleg 55
s+y+GV+ ++ grW+A+ g rk+++lg f+++ eAa+a+++a+ +l+g
Sme2.5_02680.1_g00003.1 229 SKYRGVTLHR-CGRWEAR---M---GqllGRKYIYLGLFDSEIEAARAYDKAAIELNG 279
89******99.7******...5...334337**********99************987 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 466 aa
Download sequence Send
to blast |
MFDLNLSFDD VPEESISVPG EPAPEKLNGF LFNQMENSGT SDSSVVNIET SSTAGDDEHS 60
CSDHRPDGYA FDILKSDKEA GNRGGFVINE LFPSMNGEVG LVLSENSAES SEVRIGKAPQ 120
QRLQARKCRR GPRSRSSQYR GVTFYRRTGR WESHIWDCGK QVYLGGFDTA YAAARAYDRA 180
ALKFRGLNAD INFEISDYEE DLKQMNNFSK EEFVHLLRRQ STGFSRGTSK YRGVTLHRCG 240
RWEARMGQLL GRKYIYLGLF DSEIEAARAY DKAAIELNGT GAITNFGSSA YEVVLGSDAE 300
IRGDAGTNHN LDLNLSISSS SYAENQHGNT SQNGNIQCQH GSNGLPEHNR EVLTSASTKL 360
RSKPLLHGQH MLTQDPLHFP TFKGSAIEKG LEVDASLKWM GQDENTCDRC PTLPLFSTAA 420
SSGFGNSAIT APSAASHQLH FGNGALSYHH SPSLTNMDLS PHYYRS
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| Functional Description ? help
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| Source |
Description |
| UniProt | Probable transcription factor (By similarity). Involved in spikelet transition (Probable). Together with SNB, controls synergistically inflorescence architecture and floral meristem establishment via the regulation of spatio-temporal expression of B- and E-function floral organ identity genes in the lodicules and of spikelet meristem genes (PubMed:22003982). Prevents lemma and palea elongation as well as grain growth (PubMed:28066457). {ECO:0000250|UniProtKB:P47927, ECO:0000269|PubMed:22003982, ECO:0000269|PubMed:28066457, ECO:0000305|PubMed:26631749}. |
| UniProt | Probable transcription factor (By similarity). Involved in spikelet transition. Together with SNB, controls synergistically inflorescence architecture and floral meristem establishment via the regulation of spatio-temporal expression of B- and E-function floral organ identity genes in the lodicules and of spikelet meristem genes. Prevents lemma and palea elongation as well as grain growth (By similarity). {ECO:0000250|UniProtKB:P47927, ECO:0000250|UniProtKB:Q84TB5}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Target of miR172 microRNA mediated cleavage, particularly during floral organ development. {ECO:0000269|PubMed:22003982, ECO:0000305|PubMed:20017947, ECO:0000305|PubMed:26631749, ECO:0000305|PubMed:28066457}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AC244886 | 1e-106 | AC244886.2 Solanum lycopersicum strain Heinz 1706 chromosome 10 clone sle-19g7 map 10, complete sequence. |
| GenBank | HG975449 | 1e-106 | HG975449.1 Solanum pennellii chromosome ch10, complete genome. |
| GenBank | HG975522 | 1e-106 | HG975522.1 Solanum lycopersicum chromosome ch10, complete genome. |
| Publications
? help Back to Top |
- Lee DY,An G
Two AP2 family genes, supernumerary bract (SNB) and Osindeterminate spikelet 1 (OsIDS1), synergistically control inflorescence architecture and floral meristem establishment in rice.
Plant J., 2012. 69(3): p. 445-61
[PMID:22003982] - Wang L, et al.
Coordinated regulation of vegetative and reproductive branching in rice.
Proc. Natl. Acad. Sci. U.S.A., 2015. 112(50): p. 15504-9
[PMID:26631749] - Dai Z,Wang J,Zhu M,Miao X,Shi Z
OsMADS1 Represses microRNA172 in Elongation of Palea/Lemma Development in Rice.
Front Plant Sci, 2016. 7: p. 1891
[PMID:28066457]
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