PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Sme2.5_02641.1_g00006.1

Organism

Solanum melongena

Taxonomic ID

4111

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum

Family

C2H2

Protein Properties

Length: 164aa MW: 18822.8 Da PI: 10.0801

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sme2.5_02641.1_g00006.1	genome	EGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	18.6	5.1e-06	90	112	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ Cgk+F + L H+r+H Sme2.5_02641.1_g00006.1 90 HQCNLCGKVFATGQALGGHMRKH 112 79********************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	9.24E-9	44	112	No hit	No description
PROSITE profile	PS50157	10.076	46	73	IPR007087	Zinc finger, C2H2
Pfam	PF13912	4.3E-10	46	70	IPR007087	Zinc finger, C2H2
SMART	SM00355	2.2	46	68	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.40.10	1.8E-4	47	94	IPR013083	Zinc finger, RING/FYVE/PHD-type
PROSITE pattern	PS00028	0	48	68	IPR007087	Zinc finger, C2H2
Pfam	PF13912	8.7E-12	90	115	IPR007087	Zinc finger, C2H2
PROSITE profile	PS50157	11.261	90	117	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.0022	90	112	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	92	112	IPR007087	Zinc finger, C2H2
Gene3D	G3DSA:3.30.160.60	8.0E-6	95	115	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 164 aa Download sequence Send to blast
MRAASTTMEM ELKKSRIEEE SIEKFAMANC VNIMKKNELL GRCKLFECKK CKKRFESFQA 60 LGGHSTCHKD RKNKVMSTND VSLPINSKKH QCNLCGKVFA TGQALGGHMR KHRDELSQTE 120 QQKNESKGGE SSKALEIKKD LDGRRRILFL DLNLTPYENE LRQK

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015158881.1	2e-53	PREDICTED: zinc finger protein ZAT11-like
TrEMBL	M1DJE8	2e-54	M1DJE8_SOLTU; Uncharacterized protein
STRING	PGSC0003DMT400090011	3e-55	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA366	24	150

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37430.1	2e-26	C2H2 family protein