PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_02635.1_g00007.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family GRAS
Protein Properties Length: 759aa    MW: 86484 Da    PI: 5.954
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_02635.1_g00007.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS375.85.5e-1153857571374
                     GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfse 86 
                              l++lL++cA+av+++d + a++lL++++ ++sp gd +qRla++f+ +L+arla+++s++ykal  ++ts    ++ l+a++l+  
  Sme2.5_02635.1_g00007.1 385 LRSLLINCAQAVAADDCRSATELLKQIRLHSSPFGDGNQRLAHCFADGLEARLAGTGSQIYKALINKRTS---AADFLKAYHLYLA 467
                              689*************************************************************888888...8************ PP

                     GRAS  87 vsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAe 170
                               +P+ k+s +t N++I + + +++r+H+iDf+i +G+QWp+L+q +a+R++gpp+lRiTg++ p++g   +e++eetg+rL+++A+
  Sme2.5_02635.1_g00007.1 468 SCPFRKISGFTSNKTIIRKARNATRLHVIDFGILYGFQWPTLIQRIAAREGGPPKLRITGIDFPQPGfrPAERIEETGRRLSDYAK 553
                              ******************************************************************9******************* PP

                     GRAS 171 elgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFler 256
                              +++vpfe+++ +ak++e+++le+L+++++E ++Vn+ ++  +l+de+v  +s r+ vL+l+++++P+++++   +  ++++ F++r
  Sme2.5_02635.1_g00007.1 554 SFNVPFEYQA-IAKKWETIRLEDLKLEKDEYVVVNCLYRFRNLHDETVLADSSRTVVLNLIREINPDIFIHGIVNGAYSAPFFVTR 638
                              **********.7************************************************************************** PP

                     GRAS 257 flealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsek.aakqaklll 341
                              f eal ++salfd+lea++pre  er+ +Ere++gre+ nv+aceg er+er et+++W+ r  +a F+++p++++ ++++a   +
  Sme2.5_02635.1_g00007.1 639 FREALFHFSALFDMLEANVPREFPERMLIEREIFGREALNVIACEGWERVERPETYKQWQVRHLRARFTQIPFEQQeIMDTAVEKV 724
                              *************************************************************************8752688899999 PP

                     GRAS 342 rkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                              r  + + + ++e++++++lgWk+r+++++S+W+
  Sme2.5_02635.1_g00007.1 725 RASYHKDFVIDEDNKWMLLGWKGRTIYALSCWT 757
                              9999888*************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098564.355359736IPR005202Transcription factor GRAS
PfamPF035141.9E-112385757IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 759 aa     Download sequence    Send to blast
MDPRFNRFPT SVDGFNLENQ SLISFSDNWR NNEPIIGAIY PDQRLVNGPR FDNSFVQHNV  60
QSHSNDPSPQ SNIALTSEIG TEYDYNEDFD FSDTVLSYIN QMLMEEDMED KTHMLQESLE  120
LQAKERSFYE ALGKKYPPSP EQNLSVTEQN GEIPDDYYSR SLCSSTSNVI DNSGYLIDPR  180
LVSISNDHNS FYEQGNSAGN GTYSSISSSN SINNLVDGFL DSPVSPLHIP DIYNDSHPIW  240
NFKKGVEEAS KFLPTNNKLL DNVVISDLLP QENSVCAAAQ AEKRDEGETS PTGPRRRKNS  300
HRDDRDLEEE RSSKQAAVYT ESVVRSEEFD VILLHSMGDG KEALTAFRES LKNARTKTMV  360
QSKGFTVGKG GHGKKHSGKK EVIDLRSLLI NCAQAVAADD CRSATELLKQ IRLHSSPFGD  420
GNQRLAHCFA DGLEARLAGT GSQIYKALIN KRTSAADFLK AYHLYLASCP FRKISGFTSN  480
KTIIRKARNA TRLHVIDFGI LYGFQWPTLI QRIAAREGGP PKLRITGIDF PQPGFRPAER  540
IEETGRRLSD YAKSFNVPFE YQAIAKKWET IRLEDLKLEK DEYVVVNCLY RFRNLHDETV  600
LADSSRTVVL NLIREINPDI FIHGIVNGAY SAPFFVTRFR EALFHFSALF DMLEANVPRE  660
FPERMLIERE IFGREALNVI ACEGWERVER PETYKQWQVR HLRARFTQIP FEQQEIMDTA  720
VEKVRASYHK DFVIDEDNKW MLLGWKGRTI YALSCWTSI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A4e-4839175725379Protein SCARECROW
5b3h_A4e-4839175724378Protein SCARECROW
5b3h_D4e-4839175724378Protein SCARECROW
5hyz_A3e-483897568374GRAS family transcription factor containing protein, expressed
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1293297PRRRK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754490.0HG975449.1 Solanum pennellii chromosome ch10, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006349504.10.0PREDICTED: scarecrow-like protein 9
RefseqXP_015165081.10.0PREDICTED: scarecrow-like protein 9
SwissprotO809330.0SCL9_ARATH; Scarecrow-like protein 9
TrEMBLA0A2G2VTK40.0A0A2G2VTK4_CAPBA; Scarecrow-like protein 9
STRINGSolyc10g086530.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA27624191
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37650.10.0GRAS family protein