PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum

Family

NAC

Protein Properties

Length: 272aa MW: 30952.1 Da PI: 10.067

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sme2.5_02596.1_g00001.1	genome	EGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	106.3	3.9e-33	39	179	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkklelee.......vikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknrat 78 lp+G++F+P+d+e++ e+L++kv+ + ++++ +++ +i++++P++Lp v+++ +fF++ +k+y+tg+rk+r++ Sme2.5_02596.1_g00001.1 39 LPAGVKFDPSDQEIL-EHLEAKVRLDAHKIHPlidefikTLEGEnGICYTHPEKLP-GVTKDGLVRHFFHRPSKAYTTGTRKRRKV 122 799*********9.99*99985543322332222333336******.555566788**************74 PP NAM 79 k......sgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 + + +W++tgk+++v+ k++++g kk+Lv+y g+++k+ekt+Wvmh+y+l Sme2.5_02596.1_g00001.1 123 HtdiqgnETRWHKTGKTRPVVF-KNKVKGHKKILVLYtnYGKQRKPEKTNWVMHQYHL 179 4445455888********.8899******6657999999*******98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.57E-37	34	198	IPR003441	NAC domain
PROSITE profile	PS51005	32.308	39	198	IPR003441	NAC domain
Pfam	PF02365	5.6E-15	40	179	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:2000652	Biological Process	regulation of secondary cell wall biogenesis
GO:0005634	Cellular Component	nucleus
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 272 aa Download sequence Send to blast
MTSNYENSIS VTKTIRTCPS CGHLIKSEEK AGIHNLPGLP AGVKFDPSDQ EILEHLEAKV 60 RLDAHKIHPL IDEFIKTLEG ENGICYTHPE KLPGVTKDGL VRHFFHRPSK AYTTGTRKRR 120 KVHTDIQGNE TRWHKTGKTR PVVFKNKVKG HKKILVLYTN YGKQRKPEKT NWVMHQYHLG 180 DNEDEKEGEL VVSKVFYQTQ PRQCGSNNNN NNNIRPPLPQ VRTSIAQVGS QFVQCFNPTT 240 LISFGQFDRP TTTTTTTRLP NFNNLPDGSF IP

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that plays a regulatory role in the development of secondary cell wall fibers (PubMed:18952777,PubMed:22133261). Involved in the regulation of cellulose and hemicellulose biosynthetic genes as well as of genes involved in lignin polymerization and signaling (PubMed:22133261). Is not a direct target of SND1 (PubMed:18952777). {ECO:0000269\|PubMed:18952777, ECO:0000269\|PubMed:22133261}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00459	DAP	Transfer from AT4G28500	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975446	1e-176	HG975446.1 Solanum pennellii chromosome ch07, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004243384.1	1e-174	NAC domain-containing protein 73
Swissprot	O49459	1e-116	NAC73_ARATH; NAC domain-containing protein 73
TrEMBL	A0A3Q7HF60	1e-172	A0A3Q7HF60_SOLLC; Uncharacterized protein
STRING	Solyc07g053590.2.1	1e-173	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2875	24	54

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G28500.1	1e-117	NAC domain containing protein 73

Publications ? help Back to Top
Srinivasasainagendra V,Page GP,Mehta T,Coulibaly I,Loraine AE CressExpress: a tool for large-scale mining of expression data from Arabidopsis. Plant Physiol., 2008. 147(3): p. 1004-16 [PMID:18467456] Sakamoto S,Mitsuda N Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant. Plant Cell Physiol., 2015. 56(2): p. 299-310 [PMID:25535195] Jervis J, et al. A metabolomic assessment of NAC154 transcription factor overexpression in field grown poplar stem wood. Phytochemistry, 2015. 115: p. 112-20 [PMID:25771508]