PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

3D Structure |

Regulation |

Orthologous Group |

Publication

Basic Information? help Back to Top

TF ID

Sme2.5_02560.1_g00003.1

Organism

Solanum melongena

Taxonomic ID

4111

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum

Family

LBD

Protein Properties

Length: 241aa MW: 26774.3 Da PI: 8.3235

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sme2.5_02560.1_g00003.1	genome	EGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	91.9	7.5e-29	93	174	19	100
DUF260 19 apyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100 + yf +++pkkfanvhk+FGasnv+k+l+++p+++red+++slvyeAe+r+rdPvyG++g i +lq+++ +l+++l ++k++ Sme2.5_02560.1_g00003.1 93 SDYFRSDEPKKFANVHKVFGASNVIKILNEVPQDQREDTVNSLVYEAEVRLRDPVYGCIGAIASLQRKMVELQQDLMVTKAH 174 689*************************************************************************998876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	15.756	74	175	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	4.5E-28	93	172	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 241 aa Download sequence Send to blast
MPHQFFHRRT WLQQSSDKIS RLIPGPKSTS SLEWLRRLLD WSGLVAPGLV APVRSRTGCA 60 GCWTGLVWSR RFVAGQVAPL SGALPTANLR HISDYFRSDE PKKFANVHKV FGASNVIKIL 120 NEVPQDQRED TVNSLVYEAE VRLRDPVYGC IGAIASLQRK MVELQQDLMV TKAHLAYYEA 180 KPSSTAPSNC SFLDYDPLNV NMPSVFVDTS ASGGFLDSFS QNSFAVDQTG STNEFGQFPF 240 P

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	2e-31	93	178	29	114	LOB family transfactor Ramosa2.1
5ly0_B	2e-31	93	178	29	114	LOB family transfactor Ramosa2.1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975442	1e-130	HG975442.1 Solanum pennellii chromosome ch03, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016567871.1	1e-97	PREDICTED: LOB domain-containing protein 21-like
Swissprot	Q9SRL8	3e-36	LBD21_ARATH; LOB domain-containing protein 21
TrEMBL	A0A1U8G962	3e-96	A0A1U8G962_CAPAN; LOB domain-containing protein 21-like
TrEMBL	A0A2G2X4X0	3e-96	A0A2G2X4X0_CAPBA; Uncharacterized protein
TrEMBL	A0A2G3CUD4	3e-96	A0A2G3CUD4_CAPCH; Protein LATERAL ORGAN BOUNDARIES
STRING	PGSC0003DMT400071281	6e-92	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA43	24	669

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G11090.1	1e-38	LOB domain-containing protein 21

Publications ? help Back to Top
Weber AP,Weber KL,Carr K,Wilkerson C,Ohlrogge JB Sampling the Arabidopsis transcriptome with massively parallel pyrosequencing. Plant Physiol., 2007. 144(1): p. 32-42 [PMID:17351049]