PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Sme2.5_02456.1_g00009.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
|
||||||||
Family | GeBP | ||||||||
Protein Properties | Length: 422aa MW: 46211.4 Da PI: 6.8942 | ||||||||
Description | GeBP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF573 | 79.7 | 4.5e-25 | 58 | 152 | 2 | 97 |
DUF573 2 lfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqk 87 +f+r+w+e Dei +LqGl+d +++ d++ fy +++ +s ++ksql+eK+rrL+kKf+ +++ ++g ++s+ ++hd Sme2.5_02456.1_g00009.1 58 KFHRIWTEPDEIRFLQGLLDGSSENL-FFPRDLNVFYTRFSNAMSQPYTKSQLSEKLRRLRKKFRVISSRLAKGLDMSLLSPHDLA 142 699******************77776.4456******************************************************* PP DUF573 88 ifelskkiWg 97 ++lsk++W+ Sme2.5_02456.1_g00009.1 143 LYDLSKQLWH 152 *********7 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04504 | 1.4E-27 | 59 | 152 | IPR007592 | Protein of unknown function DUF573 |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 422 aa Download sequence Send to blast |
MDSTPSLSQS PNQPLLPSSS KLPIKRKTPN DPFISAGDGD GDGGVGEMGS DPKHPPFKFH 60 RIWTEPDEIR FLQGLLDGSS ENLFFPRDLN VFYTRFSNAM SQPYTKSQLS EKLRRLRKKF 120 RVISSRLAKG LDMSLLSPHD LALYDLSKQL WHPYFADTSP FNAADKSKKS NLVGVKVSFL 180 PNIPDPDQYG IVPYQDGNGS TRNGVSGENG VFDDGDGKLS EVNVELDRGE MEEKLVDFSR 240 LDGPVQVGVG VGDIAAKVVM DVFDECLKDF RNGVGERSNL GVILKEASSD EFEERWKEQR 300 VAELNVLARR MRPSPMSTGH LCHLPGSLRT YPYDFLGILR QTPMQPQNSW ANTQRKPSKL 360 PVSVNAVGSP GPLARLVVDT HASVDAAMPP GPLVRLVANP LASANAVRPP GLLAGLVADP 420 PI |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | HG975517 | 0.0 | HG975517.1 Solanum lycopersicum chromosome ch05, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_006360388.1 | 1e-168 | PREDICTED: uncharacterized protein LOC102597795 | ||||
TrEMBL | M1DZF3 | 1e-167 | M1DZF3_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400096875 | 1e-168 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12822 | 19 | 21 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G28040.1 | 4e-18 | DNA-binding storekeeper protein-related transcriptional regulator |