 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Sme2.5_02456.1_g00003.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
|
| Family |
AP2 |
| Protein Properties |
Length: 432aa MW: 47905 Da PI: 6.3562 |
| Description |
AP2 family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Sme2.5_02456.1_g00003.1 | genome | EGD | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | AP2 | 25.5 | 3.3e-08 | 231 | 263 | 3 | 38 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgt 38
y+GV++++++grW A+I + +k +lg+f +
Sme2.5_02456.1_g00003.1 231 YRGVTRHHQQGRWQARIGRVAG---NKDLYLGTFEF 263
9***************988532...5********98 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 432 aa
Download sequence Send
to blast |
MLNSSHQSSS MLQSNTPSAV PHESHQYFFA DNFFPHGWNV PKTHELMYHQ GLCVDSQIIQ 60
HHHQPPPKLE DFFGGETEAQ DSSSLTHIYD HHGGAAGDGG YFNDGRQDLN NNYQVAVGGF 120
PTLPANSGSE VDDSPVMGSE FATESSYPPI ITLGVATNSE KAIVTGGIDG QEDMKHIYGI 180
TVVKERAKQE KGVKASDYTK EIEEMKHMTK QEFIASLRRK SSGFSRGASM YRGVTRHHQQ 240
GRWQARIGRV AGNKDLYLGT FEFSDNPTTT IYLVKFYKWS MGRIESTEEE AAEAYDIAAI 300
KFRGLNAVTN FEMNRYDVEA IMKSSLPIGG AAKRLKISLE SEQKPSLNDT YQQAPHNNVN 360
NNNNSINFGG ISPVSAIPCG LPFDANQPYY HHSFFPHLQY SSNDSGASGH TASTMPLLPS 420
PAEIFIWPHQ SY
|
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | HG975517 | 1e-151 | HG975517.1 Solanum lycopersicum chromosome ch05, complete genome. |
| Publications
? help Back to Top |
- Krizek BA
Intronic sequences are required for AINTEGUMENTA-LIKE6 expression in Arabidopsis flowers.
BMC Res Notes, 2015. 8: p. 556
[PMID:26459062] - Yamaguchi N,Jeong CW,Nole-Wilson S,Krizek BA,Wagner D
AINTEGUMENTA and AINTEGUMENTA-LIKE6/PLETHORA3 Induce LEAFY Expression in Response to Auxin to Promote the Onset of Flower Formation in Arabidopsis.
Plant Physiol., 2016. 170(1): p. 283-93
[PMID:26537561] - Krizek BA, et al.
RNA-Seq Links the Transcription Factors AINTEGUMENTA and AINTEGUMENTA-LIKE6 to Cell Wall Remodeling and Plant Defense Pathways.
Plant Physiol., 2016. 171(3): p. 2069-84
[PMID:27208279] - Du Y,Scheres B
PLETHORA transcription factors orchestrate de novo organ patterning during Arabidopsis lateral root outgrowth.
Proc. Natl. Acad. Sci. U.S.A., 2017. 114(44): p. 11709-11714
[PMID:29078398]
|
