 |
Plant Transcription
Factor Database
|
Transcription Factor Information
Basic
Information? help
Back to Top |
TF ID |
Sme2.5_02438.1_g00007.1 |
Organism |
|
Taxonomic ID |
|
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
|
Family |
NF-YA |
Protein Properties |
Length: 447aa MW: 49090.6 Da PI: 9.0513 |
Description |
NF-YA family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Sme2.5_02438.1_g00007.1 | genome | EGD | View CDS |
|
Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | CBFB_NFYA | 100.1 | 2.3e-31 | 170 | 226 | 1 | 58 |
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58
+ep+YVNaKQy++Il+RR++Rak+e ekkl +k rkpylheSRh+hAl+R+R+sgGrF
Sme2.5_02438.1_g00007.1 170 QEPVYVNAKQYHGILRRRESRAKAELEKKL-IKVRKPYLHESRHQHALKRARASGGRF 226
69****************************.**************************9 PP
|
Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0010262 | Biological Process | somatic embryogenesis |
GO:0048510 | Biological Process | regulation of timing of transition from vegetative to reproductive phase |
GO:0055046 | Biological Process | microgametogenesis |
GO:0016602 | Cellular Component | CCAAT-binding factor complex |
GO:0003677 | Molecular Function | DNA binding |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 447 aa
Download sequence Send
to blast |
MQSNSKSANC EEARTYNVLN PSVNSETWWN TADNNPVSLG LMGESASDSP SPEQAVDGRS 60 QSDGGANEEN DAAPEKSQST IPVHSELAGS YAQVGQNLQP TAPTLPPKGD GSLTQTPQLE 120 LVSHSMACAP NLYVDPYYGG MLTPFGQPMV PPHVLDMHHP RMPLPHEIAQ EPVYVNAKQY 180 HGILRRRESR AKAELEKKLI KVRKPYLHES RHQHALKRAR ASGGRFAKKS DAGTSKVADS 240 GSAVSLQSVH SSGSEQLLSS TADIPEWHKD RSLAEHQHSY SNGQGYGKQS SFQEPKYQAQ 300 SAQLHVSVLA GPMPGGNSSL AFVAMVLKRR VLRIVGSVLP FCTVNRTRTR VEKEEFMVVS 360 FWAVNAIIVE SGVFVQVGLN IIVNYQVCCV KLKRVNSTYV TTLRMGFEMR VPRKQPLYLG 420 SGKVCVHSIL LRPHLWDFTG YVVVVDP
|
Annotation --
Nucleotide ? help
Back to Top |
Source |
Hit ID |
E-value |
Description |
GenBank | HG975440 | 1e-101 | HG975440.1 Solanum pennellii chromosome ch01, complete genome. |