 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Sme2.5_02406.1_g00005.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
|
| Family |
NF-YA |
| Protein Properties |
Length: 179aa MW: 20335.9 Da PI: 10.0836 |
| Description |
NF-YA family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Sme2.5_02406.1_g00005.1 | genome | EGD | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | CBFB_NFYA | 96.1 | 3.9e-30 | 46 | 102 | 1 | 58 |
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58
+ep+YVNaKQy+rIl+RRq+Rak+e ekk +k rkpylheSRh+hAlrR+R+sgGrF
Sme2.5_02406.1_g00005.1 46 QEPVYVNAKQYRRILQRRQSRAKAELEKKQ-IKDRKPYLHESRHQHALRRARASGGRF 102
69************************9999.**************************9 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 179 aa
Download sequence Send
to blast |
MVRKDIMVSV VLRYYLVLTD YCTIQVPPHV LDMHYARMPL PQEMAQEPVY VNAKQYRRIL 60
QRRQSRAKAE LEKKQIKDRK PYLHESRHQH ALRRARASGG RFAKKTDVST GTGSVSSSGS 120
EPLQQSNAAD IQKKRESGML AELQQSYSNG SSYGNQSSFQ ESKDEYQSAE SMEGGFSGK
|
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | BT014146 | 0.0 | BT014146.1 Lycopersicon esculentum clone 133265F, mRNA sequence. |
