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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sme2.5_02389.1_g00009.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | C2H2 | ||||||||
Protein Properties | Length: 253aa MW: 28668.4 Da PI: 8.9953 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 12.9 | 0.00033 | 95 | 117 | 2 | 23 |
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 +C+ C+++++++ +L H + H Sme2.5_02389.1_g00009.1 95 SCSVCSRVYPTSRLLSIHVSEaH 117 6*****************99877 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00355 | 0.41 | 67 | 92 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 69 | 92 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 5.4 | 94 | 117 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 96 | 117 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.38 | 132 | 157 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 134 | 157 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 253 aa Download sequence Send to blast |
MAMEFETQNQ LGFPFWSPIR RRFGPDDPFF AYGNIQRELL AKQVALDLTE EEEQLVQNIT 60 DEEISNLFCP IIGCGARMKS LDDFEDHYVT RHTASCSVCS RVYPTSRLLS IHVSEAHDSF 120 FQAKAARGYP MYECLVEGCG VKLKSYKSRQ QHLVDKHKFP ASYEFFRKAR PSKKQRQKLQ 180 HKQALNKTQE TSSAMQVEEE TIDNLVSAVS KLTTSDSPSA ISFGRSRARG LSFVPRAVNR 240 QRGPVTSTGG TKT |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975441 | 1e-151 | HG975441.1 Solanum pennellii chromosome ch02, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006338700.1 | 1e-179 | PREDICTED: zinc finger protein 511 | ||||
TrEMBL | M1BSR1 | 1e-178 | M1BSR1_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400052062 | 1e-179 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA10211 | 20 | 22 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G14140.1 | 1e-114 | zinc ion binding;nucleic acid binding;zinc ion binding |