PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sme2.5_02378.1_g00001.1

Organism

Solanum melongena

Taxonomic ID

4111

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum

Family

bZIP

Protein Properties

Length: 439aa MW: 50118.4 Da PI: 5.9342

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sme2.5_02378.1_g00001.1	genome	EGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	31.4	4.1e-10	152	183	2	33
XXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 2 kelkrerrkqkNReAArrsRqRKkaeieeLee 33 +++k+ rr+++NReAAr+sR+RKka++++Le+ Sme2.5_02378.1_g00001.1 152 RSDKVRRRLAQNREAARKSRLRKKAYVQQLEN 183 799***************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	2.4E-7	149	198	No hit	No description
SMART	SM00338	5.8E-5	151	211	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	7.5E-7	152	183	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.117	153	197	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	3.13E-6	155	196	No hit	No description
PROSITE pattern	PS00036	0	158	173	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	2.2E-27	242	316	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0042742	Biological Process	defense response to bacterium
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 439 aa Download sequence Send to blast
MKGVVEMACY WQLIIKKLLE YDICTFLTRI IDANFHSKEW YTTDLIFWKS LELCGELCEK 60 TIITRIPKTM NSSTYTQFVA SKRMGICDPI HQIGMWGDFK GSSFPDTLIL EVENCLENEM 120 PIMEKRVHNE IEEPSQVTVG TSNRYEPEAS KRSDKVRRRL AQNREAARKS RLRKKAYVQQ 180 LENSKLRLLQ VEQELERARQ QGLYVGDGLD SSQMGCSGTA NSGIASFEME YSQWVDEQDR 240 QTDDLRNSLN SQTGEIELRI LVEECLNHYF NLFRLKATAA NVDVLYLMSG IWKTSAERFF 300 LWIAGFRPSE LLKVLTPHVE PLTEQQVQEV CNLTQSCQQA EDALSQGMVK LHQILAEAVA 360 AGTLGEGIIL PQMAATIEKL EALVRFVNQA DHLRQETLLQ MSCILTAHQS AQGLLALGEY 420 FKRLRALSSR WASRLSEPS

Sequence ? help Back to Top

Protein Sequence Length: 439 aa Download sequence Send to blast

MKGVVEMACY WQLIIKKLLE YDICTFLTRI IDANFHSKEW YTTDLIFWKS LELCGELCEK  60
TIITRIPKTM NSSTYTQFVA SKRMGICDPI HQIGMWGDFK GSSFPDTLIL EVENCLENEM  120
PIMEKRVHNE IEEPSQVTVG TSNRYEPEAS KRSDKVRRRL AQNREAARKS RLRKKAYVQQ  180
LENSKLRLLQ VEQELERARQ QGLYVGDGLD SSQMGCSGTA NSGIASFEME YSQWVDEQDR  240
QTDDLRNSLN SQTGEIELRI LVEECLNHYF NLFRLKATAA NVDVLYLMSG IWKTSAERFF  300
LWIAGFRPSE LLKVLTPHVE PLTEQQVQEV CNLTQSCQQA EDALSQGMVK LHQILAEAVA  360
AGTLGEGIIL PQMAATIEKL EALVRFVNQA DHLRQETLLQ MSCILTAHQS AQGLLALGEY  420
FKRLRALSSR WASRLSEPS

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. Could also bind to the Hex-motif (5'-TGACGTGG-3') another cis-acting element found in plant histone promoters.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00586	DAP	Transfer from AT5G65210	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	X82544	0.0	X82544.1 S.tuberosum mRNA for leucine zipper transcription factor.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001305473.1	0.0	TGACG-sequence-specific DNA-binding protein TGA-1A
Swissprot	P14232	0.0	TGA1A_TOBAC; TGACG-sequence-specific DNA-binding protein TGA-1A
TrEMBL	Q43647	0.0	Q43647_SOLTU; Leucine zipper transcription factor
STRING	Solyc04g054320.2.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA780	24	97

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G65210.5	1e-135	bZIP family protein

Publications ? help Back to Top
Klinedinst S,Pascuzzi P,Redman J,Desai M,Arias J A xenobiotic-stress-activated transcription factor and its cognate target genes are preferentially expressed in root tip meristems. Plant Mol. Biol., 2000. 42(5): p. 679-88 [PMID:10809441] Johnson C,Boden E,Desai M,Pascuzzi P,Arias J In vivo target promoter-binding activities of a xenobiotic stress-activated TGA factor. Plant J., 2001. 28(2): p. 237-43 [PMID:11722767] Katagiri F,Seipel K,Chua NH Identification of a novel dimer stabilization region in a plant bZIP transcription activator. Mol. Cell. Biol., 1992. 12(11): p. 4809-16 [PMID:1406663] Miao ZH,Lam E Construction of a trans-dominant inhibitor for members of the TGA family of transcription factors conserved in higher plants. Plant J., 1995. 7(6): p. 887-96 [PMID:7599649] Pascuzzi P,Hamilton D,Bodily K,Arias J Auxin-induced stress potentiates trans-activation by a conserved plant basic/leucine-zipper factor. J. Biol. Chem., 1998. 273(41): p. 26631-7 [PMID:9756903]