PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sme2.5_02342.1_g00010.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 245aa MW: 28156.8 Da PI: 9.5242 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 48.8 | 8.8e-16 | 11 | 50 | 3 | 42 |
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42 ien+ r+v++ kR +g+l K +EL +LCd+e+avii+s+ Sme2.5_02342.1_g00010.1 11 IENENERKVSYNKREKGLLTKLKELGILCDVEIAVIIYSP 50 9*************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 1.3E-17 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 18.348 | 1 | 49 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 8.76E-20 | 3 | 95 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.4E-10 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00120 | 4.09E-19 | 3 | 59 | No hit | No description |
Pfam | PF00319 | 8.4E-16 | 11 | 51 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.4E-10 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.4E-10 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 245 aa Download sequence Send to blast |
MPRKKVKFSL IENENERKVS YNKREKGLLT KLKELGILCD VEIAVIIYSP YKIEPKVFPN 60 HGSIVNTLTK FKELPTDDKS KKMVTRDEFT KKRIEKMKEK LIKAREENRV KEITNEMYEV 120 LKGKDIPIDM HPYDVNNLSY VIKKNLKQIH ESMKKKIGEE GYISNFPQSI IGPIIPSGTN 180 IEGPNDPLLS HTSLEVSMVP PLSPSMFFSG INYERDNDSF FVPNLATTIV ALPTIPLSTL 240 HEFFQ |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006341870.1 | 2e-87 | PREDICTED: agamous-like MADS-box protein AGL80 | ||||
TrEMBL | M1D936 | 5e-94 | M1D936_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400085256 | 8e-95 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1329 | 10 | 40 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G48670.1 | 2e-26 | AGAMOUS-like 80 |