PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sme2.5_02311.1_g00005.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | C3H | ||||||||
Protein Properties | Length: 706aa MW: 78844.9 Da PI: 6.0626 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 24.5 | 4.6e-08 | 125 | 146 | 4 | 26 |
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 ++C ff++ G+C+ Gd+C F+H Sme2.5_02311.1_g00005.1 125 VPCIFFQQ-GICRKGDKCAFMHA 146 69******.*************5 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 10.793 | 31 | 60 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF15663 | 2.0E-11 | 32 | 86 | No hit | No description |
SMART | SM00356 | 0.0023 | 32 | 59 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 11.235 | 62 | 88 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.12 | 64 | 87 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.756 | 121 | 148 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.4E-5 | 121 | 147 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.35E-6 | 122 | 146 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 5.5E-6 | 125 | 146 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.6E-4 | 126 | 146 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 706 aa Download sequence Send to blast |
MVGPTPPPPQ TKEVPAPASA AVPLSAEEEA LKRNTDCVYF LASPLTCKKG SECEYRHSDM 60 ARLNPRDCWY WLNGNCLNPK CAFRHPPLDG FLEAQVPAAM GFSVSPMVSI PPMPQVPYAS 120 SKQAVPCIFF QQGICRKGDK CAFMHAPSFV SNKPAQPPVC TASSETSTVN KAFGGVEKSV 180 QGTKLSQTNT LKPGELSKPV RKLENHPTKK DNAFDEKVLA PNSVINREHS RYKPTSAPPT 240 NGNPLSGPNR MQQPIGIDDH SSMQYKDDEI SREPSPGFDV LVDDELRGSD YYHDEDHYGG 300 GRENGGRNEY DLGDSADYDS VADIDQDMYR DLRGYDSYDR LQGHYAWEQH IASSETIPGG 360 SAHLESKRYG TVASPEHVEM SDLRHRLSKH RRANGLKSVI GHDFSSENQV EDRSNKNSRR 420 DAHYLPSHNS SPSDRLRGRI KLPVRSSSPA DGAELWLDRA RDRVRLSSER PQPYSYQGRP 480 RDRIKGRVQE DLNNDGRNNR VPRVRRDAIN ANNSDFMRPK SLAELKGRKT AESNDQQPLG 540 KRKFQKLDSG DDLSFEGPMP LKEILKRKKG GEGGMLSGGS EDDQHERKHQ TEKTSMTAGN 600 VNFPSAVAKN GSEDLPIKKE EYKLVSKSAD HQPHLHHSEN EVEAEEEMVV EGADTQDHKG 660 YDQRDGHQDD YVPAEGEDYN FVEGDPDDEF LEDDEDDFAK KLGIVH |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975513 | 0.0 | HG975513.1 Solanum lycopersicum chromosome ch01, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006348543.1 | 0.0 | PREDICTED: zinc finger CCCH domain-containing protein 17-like | ||||
TrEMBL | M1BCR9 | 0.0 | M1BCR9_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400042253 | 0.0 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4024 | 16 | 33 |