PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_02311.1_g00005.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family C3H
Protein Properties Length: 706aa    MW: 78844.9 Da    PI: 6.0626
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_02311.1_g00005.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.54.6e-08125146426
                              ---SGGGGTS--TTTTT-SS-SS CS
                  zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                              ++C ff++ G+C+ Gd+C F+H 
  Sme2.5_02311.1_g00005.1 125 VPCIFFQQ-GICRKGDKCAFMHA 146
                              69******.*************5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010310.7933160IPR000571Zinc finger, CCCH-type
PfamPF156632.0E-113286No hitNo description
SMARTSM003560.00233259IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010311.2356288IPR000571Zinc finger, CCCH-type
SMARTSM003560.126487IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.756121148IPR000571Zinc finger, CCCH-type
SMARTSM003561.4E-5121147IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.35E-6122146IPR000571Zinc finger, CCCH-type
PfamPF006425.5E-6125146IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.6E-4126146IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 706 aa     Download sequence    Send to blast
MVGPTPPPPQ TKEVPAPASA AVPLSAEEEA LKRNTDCVYF LASPLTCKKG SECEYRHSDM  60
ARLNPRDCWY WLNGNCLNPK CAFRHPPLDG FLEAQVPAAM GFSVSPMVSI PPMPQVPYAS  120
SKQAVPCIFF QQGICRKGDK CAFMHAPSFV SNKPAQPPVC TASSETSTVN KAFGGVEKSV  180
QGTKLSQTNT LKPGELSKPV RKLENHPTKK DNAFDEKVLA PNSVINREHS RYKPTSAPPT  240
NGNPLSGPNR MQQPIGIDDH SSMQYKDDEI SREPSPGFDV LVDDELRGSD YYHDEDHYGG  300
GRENGGRNEY DLGDSADYDS VADIDQDMYR DLRGYDSYDR LQGHYAWEQH IASSETIPGG  360
SAHLESKRYG TVASPEHVEM SDLRHRLSKH RRANGLKSVI GHDFSSENQV EDRSNKNSRR  420
DAHYLPSHNS SPSDRLRGRI KLPVRSSSPA DGAELWLDRA RDRVRLSSER PQPYSYQGRP  480
RDRIKGRVQE DLNNDGRNNR VPRVRRDAIN ANNSDFMRPK SLAELKGRKT AESNDQQPLG  540
KRKFQKLDSG DDLSFEGPMP LKEILKRKKG GEGGMLSGGS EDDQHERKHQ TEKTSMTAGN  600
VNFPSAVAKN GSEDLPIKKE EYKLVSKSAD HQPHLHHSEN EVEAEEEMVV EGADTQDHKG  660
YDQRDGHQDD YVPAEGEDYN FVEGDPDDEF LEDDEDDFAK KLGIVH
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755130.0HG975513.1 Solanum lycopersicum chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006348543.10.0PREDICTED: zinc finger CCCH domain-containing protein 17-like
TrEMBLM1BCR90.0M1BCR9_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000422530.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA40241633