PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sme2.5_02290.1_g00005.1

Organism

Solanum melongena

Taxonomic ID

4111

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum

Family

Trihelix

Protein Properties

Length: 373aa MW: 41571 Da PI: 8.9374

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sme2.5_02290.1_g00005.1	genome	EGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	62.1	1.3e-19	36	127	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkr.tsessstcpy 81 +Wt++e+laLiea+re++ +lrrg l+ ++W++v++++ + +++ qC++k+e+l++ry+++k+++ + t + s++ + Sme2.5_02290.1_g00005.1 36 CWTQEETLALIEAYRERWYALRRGYLRTADWDAVAAAVtsrcPDASPAKTSAQCRHKMEKLRQRYRAEKQRSLSCpTGRFFSSWFF 121 8**********************************977776667788999***************99987888899 PP trihelix 82 fdqlea 87 fd+++a Sme2.5_02290.1_g00005.1 122 FDNMDA 127 *985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	7.7E-20	35	128	No hit	No description
PROSITE profile	PS50090	6.876	37	97	IPR017877	Myb-like domain
SMART	SM00595	7.0E-10	44	133	IPR006578	MADF domain

Sequence ? help Back to Top
Protein Sequence Length: 373 aa Download sequence Send to blast
MSSNVDSAVV VAENIVSEEK PPPPQPPPAR RFPPPCWTQE ETLALIEAYR ERWYALRRGY 60 LRTADWDAVA AAVTSRCPDA SPAKTSAQCR HKMEKLRQRY RAEKQRSLSC PTGRFFSSWF 120 FFDNMDAMEN GTTVAAIRSN NQQIAEKQQG VPAVSAVSAD GLPNGYCSYM DMGSNKEEHP 180 HDVEFSSGFR MKNGISMKGK RTGRIIGDVN GFDQGGIKGG GNYVMNSSFD CDEGSEYNGS 240 NAIDGFHIRN IGVSNPRRSY NSGNVEQQPS LDSRFSPGLS KFGKKGGGGV GMKRRRDPVE 300 EMVSSIKLLG EGFIKMEKMK MEMAKEVEQM RMEMEMKRNE MILESQKQIV EAFVKVLSEV 360 HKNKNGKTVS PES

Sequence ? help Back to Top

Protein Sequence Length: 373 aa Download sequence Send to blast

MSSNVDSAVV VAENIVSEEK PPPPQPPPAR RFPPPCWTQE ETLALIEAYR ERWYALRRGY  60
LRTADWDAVA AAVTSRCPDA SPAKTSAQCR HKMEKLRQRY RAEKQRSLSC PTGRFFSSWF  120
FFDNMDAMEN GTTVAAIRSN NQQIAEKQQG VPAVSAVSAD GLPNGYCSYM DMGSNKEEHP  180
HDVEFSSGFR MKNGISMKGK RTGRIIGDVN GFDQGGIKGG GNYVMNSSFD CDEGSEYNGS  240
NAIDGFHIRN IGVSNPRRSY NSGNVEQQPS LDSRFSPGLS KFGKKGGGGV GMKRRRDPVE  300
EMVSSIKLLG EGFIKMEKMK MEMAKEVEQM RMEMEMKRNE MILESQKQIV EAFVKVLSEV  360
HKNKNGKTVS PES

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975447	0.0	HG975447.1 Solanum pennellii chromosome ch08, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006362480.1	0.0	PREDICTED: trihelix transcription factor ASIL2-like
TrEMBL	A0A0V0IKW1	0.0	A0A0V0IKW1_SOLCH; Putative trihelix transcription factor ASIL2-like
STRING	PGSC0003DMT400052836	0.0	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA12774	16	17

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G44730.1	2e-31	Trihelix family protein