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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sme2.5_02282.1_g00013.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | bHLH | ||||||||
Protein Properties | Length: 228aa MW: 26179.6 Da PI: 6.1608 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 39.1 | 1.3e-12 | 31 | 77 | 4 | 54 |
HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 ++ + Er+RR+++N++++ Lr ++P+ kK++ a+i + A++YI +L Sme2.5_02282.1_g00013.1 31 KNIMSERNRRKKLNERLFALRAVVPNiT-----KKMDRASIIKDAIDYIEEL 77 56788*********************55.....99**************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 15.809 | 27 | 77 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 3.93E-17 | 29 | 92 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.37E-11 | 30 | 82 | No hit | No description |
Pfam | PF00010 | 3.2E-10 | 31 | 77 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.5E-15 | 33 | 92 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 3.5E-13 | 33 | 83 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 228 aa Download sequence Send to blast |
MLFQSESYLD EPIWSYYDSS SPDGACAQSS KNIMSERNRR KKLNERLFAL RAVVPNITKK 60 MDRASIIKDA IDYIEELHKQ ERRIRTEISD LEFGRSKKNT HFELDEDESC LDLKHKRSRT 120 LEQQYGYDSS GSTTTSFNSP LELRVSSMGE KIVAVSLTCS KRRDTMLKLC EVFESLNIKI 180 ISANIYAFSG RLHKTAFIEA DEEERDVLKL RIETAIASLN DPDSPMSS |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019259718.1 | 1e-111 | PREDICTED: transcription factor bHLH35 isoform X2 | ||||
Swissprot | Q2HIV9 | 4e-69 | BH035_ARATH; Transcription factor bHLH35 | ||||
TrEMBL | A0A314LD78 | 1e-110 | A0A314LD78_NICAT; Transcription factor bhlh35 | ||||
STRING | XP_009760780.1 | 1e-109 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2923 | 24 | 51 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G57150.1 | 2e-69 | bHLH family protein |