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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sme2.5_02214.1_g00007.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | GRAS | ||||||||
Protein Properties | Length: 879aa MW: 100675 Da PI: 6.8979 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 357.6 | 1.9e-109 | 505 | 876 | 1 | 373 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfse 86 l++lL++cA+ v+++d + a + L+++++++ + gdp qRla++f+ +L+arla+++++ly+al+p++ + +e+l+a++++ Sme2.5_02214.1_g00007.1 505 LRTLLVSCAQSVAADDRRTAYEQLKQIRQHCCSIGDPYQRLASVFADGLEARLAGTGTQLYAALAPKKIT---AAEKLKAYQVYLS 587 6789****************************************************************99...9************ PP GRAS 87 vsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAe 170 ++P+ k+s + aN++I +++++++H iDf+i +G+QWp L+q L++ p+gpp+lRiTg++ p++g +e+le+tg+rLak++e Sme2.5_02214.1_g00007.1 588 ACPFKKISIFFANKMIFHTASNARTLHLIDFGILYGFQWPILIQLLSQIPGGPPKLRITGIDLPQPGfrPAESLEQTGSRLAKYCE 673 ******************************************************************9******************* PP GRAS 171 elgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFler 256 +++v fe+n+++++++e++++e+L++ +gE+laVn+ ++ +llde+v l+s+rd++L l+++++P+++v + + +++++ F++r Sme2.5_02214.1_g00007.1 674 RFKVLFEYNAIATQNWENIKIEDLKLVSGETLAVNCLFRFRNLLDETVMLDSPRDAILGLIRKMNPDIFVQAVINGSYSAPFFVTR 759 ***********999************************************************************************ PP GRAS 257 flealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllr 342 f eal ++s+lfd+++a+lpr++++r E+e+ +re++nv+aceg+er+er et+++W+ r ++aGFk +pl+++ +++ ++ ++ Sme2.5_02214.1_g00007.1 760 FREALFHFSTLFDMFDATLPRDDQQRLHFEQEFYRREVMNVIACEGFERVERPETYKQWQVRNMRAGFKLLPLNQQLMQKLRCKVK 845 ************************************************************************************** PP GRAS 343 kvksdgyrveeesgslvlgWkdrpLvsvSaW 373 + + + ++e+ +++++gWk+r + + S+W Sme2.5_02214.1_g00007.1 846 SGYHRDFVLDEDGQWMLQGWKGRVVCASSCW 876 *99999************************* PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 64.989 | 479 | 857 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 6.6E-107 | 505 | 876 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009410 | Biological Process | response to xenobiotic stimulus | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005829 | Cellular Component | cytosol |
Sequence ? help Back to Top |
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Protein Sequence Length: 879 aa Download sequence Send to blast |
MRMLRWMCGH SRSDKVRNET IREKLEVAPV ADKMREARLR WFGHVQRRSV DAPVRRRFIF 60 SWVGLIKAQP RLVCSNFTYV YPLHLFCPFS FLFKNKVRQR LPPLFVLSSL QFTLKIVLHA 120 TVMDPRFIPL PDPVNTFEFE DQINLSDFEG SMNLRQSYNN EYVASGVPYS APSVDIANFA 180 SSSNVSSEVD SPDDHDSDSL FKYLNQILME ENIEDRPSMF HDPLALKAAE KSLYEALGKT 240 YPPSPYRTPY YVDHQLESPS PDNIFQTSSD HSTSSSYAHS NSIDPHWIVD PGESKLPLPV 300 ESHPSEYSIQ PLLQSNSERF HGPLNDVNNL NVHMNSFLNP NVLSNMFTDR ESILQFRRGM 360 EEANKFLPNV SQFVVDLDKY TFPPKVEEVT KEAVVKVEKD ERNHSPNGSK GRKHQYPEDS 420 DFEEERSNKQ SAIYVEEEAE LSEMFDRVLL CTDKGETMCG ETVCGDIKSE MPVDKNLDQN 480 GQAHGSNGGK TRAKKQGTKN EAVDLRTLLV SCAQSVAADD RRTAYEQLKQ IRQHCCSIGD 540 PYQRLASVFA DGLEARLAGT GTQLYAALAP KKITAAEKLK AYQVYLSACP FKKISIFFAN 600 KMIFHTASNA RTLHLIDFGI LYGFQWPILI QLLSQIPGGP PKLRITGIDL PQPGFRPAES 660 LEQTGSRLAK YCERFKVLFE YNAIATQNWE NIKIEDLKLV SGETLAVNCL FRFRNLLDET 720 VMLDSPRDAI LGLIRKMNPD IFVQAVINGS YSAPFFVTRF REALFHFSTL FDMFDATLPR 780 DDQQRLHFEQ EFYRREVMNV IACEGFERVE RPETYKQWQV RNMRAGFKLL PLNQQLMQKL 840 RCKVKSGYHR DFVLDEDGQW MLQGWKGRVV CASSCWVPA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_A | 6e-42 | 488 | 878 | 1 | 379 | Protein SCARECROW |
5b3h_D | 6e-42 | 488 | 878 | 1 | 379 | Protein SCARECROW |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975445 | 0.0 | HG975445.1 Solanum pennellii chromosome ch06, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004241220.1 | 0.0 | scarecrow-like protein 14 | ||||
Swissprot | Q9XE58 | 0.0 | SCL14_ARATH; Scarecrow-like protein 14 | ||||
TrEMBL | M1CZ55 | 0.0 | M1CZ55_SOLTU; Uncharacterized protein | ||||
STRING | Solyc06g076280.1.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA276 | 24 | 191 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G07530.1 | 0.0 | SCARECROW-like 14 |
Publications ? help Back to Top | |||
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