PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sme2.5_02180.1_g00004.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | TCP | ||||||||
Protein Properties | Length: 286aa MW: 31357.8 Da PI: 10.0157 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 97.4 | 2.7e-30 | 61 | 187 | 3 | 89 |
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.....eaesssssas 83 g+kdrhsk++T +g+RdRR+Rls+++a++++dLqd+LG+ ++sk ++WL+ + k +i++l+ ++ +++s + +++++ ++++ Sme2.5_02180.1_g00004.1 61 GGKDRHSKVCTVKGLRDRRIRLSVPTAIQLYDLQDRLGLSQPSKVVDWLIDATKNEIDKLPPLQMPPPSLShffnmKDHQDFVETG 146 78*************************************************************88888333334344444444444 PP TCP 84 nsssg...................................k 89 ++++g Sme2.5_02180.1_g00004.1 147 FPTNGdhflqssnlgmlntfnntntnalispnsnlslgpfG 187 44444555533344444444444444444444445555552 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 1.3E-26 | 62 | 125 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 29.479 | 62 | 120 | IPR017887 | Transcription factor TCP subgroup |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009965 | Biological Process | leaf morphogenesis | ||||
GO:0030154 | Biological Process | cell differentiation | ||||
GO:0045962 | Biological Process | positive regulation of development, heterochronic |
Sequence ? help Back to Top |
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Protein Sequence Length: 286 aa Download sequence Send to blast |
MNSRKQETSG GDTNYSKILS STTTTTATTT TTPSSSSSRQ SSSWAAGFKN PRIVRVSPNF 60 GGKDRHSKVC TVKGLRDRRI RLSVPTAIQL YDLQDRLGLS QPSKVVDWLI DATKNEIDKL 120 PPLQMPPPSL SHFFNMKDHQ DFVETGFPTN GDHFLQSSNL GMLNTFNNTN TNALISPNSN 180 LSLGPFGNYR SSFSSSQNQC PQHNMSPFPS GSHHQQLYFC PSSSTSATTL PSLVPPYNSS 240 QLNHFHPNSL MPTLQLISTP VKSSFSLNDN NKGLNLQAHH KEGTGS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 3e-20 | 67 | 121 | 1 | 55 | Putative transcription factor PCF6 |
5zkt_B | 3e-20 | 67 | 121 | 1 | 55 | Putative transcription factor PCF6 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00065 | PBM | Transfer from AT5G60970 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | GQ496324 | 1e-112 | GQ496324.1 Solanum lycopersicum TCP transcription factor 6 (TCP6) mRNA, complete cds. | |||
GenBank | HG975518 | 1e-112 | HG975518.1 Solanum lycopersicum chromosome ch06, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006354751.1 | 1e-118 | PREDICTED: transcription factor TCP5-like | ||||
TrEMBL | M0ZY34 | 1e-116 | M0ZY34_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400010453 | 1e-117 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA821 | 24 | 99 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60970.1 | 1e-41 | TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 5 |