PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sme2.5_02107.1_g00005.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | WRKY | ||||||||
Protein Properties | Length: 615aa MW: 66355.4 Da PI: 6.557 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 100.2 | 1.2e-31 | 260 | 317 | 2 | 60 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 +DgynWrKYGqK vkgsefprsYY+Ct+++C+vkk ers d++++ei+Y+g+H+h+k Sme2.5_02107.1_g00005.1 260 EDGYNWRKYGQKLVKGSEFPRSYYKCTYPNCEVKKIFERSP-DGQITEIVYKGSHDHPK 317 7****************************************.***************85 PP | |||||||
2 | WRKY | 106.1 | 1.8e-33 | 431 | 489 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK+v+g+++prsYY+Ct agCpv+k+ver+++dpk+v++tYeg+Hnh+ Sme2.5_02107.1_g00005.1 431 LDDGYRWRKYGQKVVRGNPNPRSYYKCTNAGCPVRKHVERASHDPKAVITTYEGKHNHD 489 59********************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 1.1E-26 | 250 | 318 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 22.653 | 254 | 318 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.7E-24 | 256 | 318 | IPR003657 | WRKY domain |
SMART | SM00774 | 9.1E-34 | 259 | 317 | IPR003657 | WRKY domain |
Pfam | PF03106 | 6.1E-24 | 260 | 316 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 1.6E-37 | 416 | 491 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 2.62E-29 | 423 | 491 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 38.825 | 426 | 491 | IPR003657 | WRKY domain |
SMART | SM00774 | 3.1E-39 | 431 | 490 | IPR003657 | WRKY domain |
Pfam | PF03106 | 3.8E-26 | 432 | 489 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009611 | Biological Process | response to wounding | ||||
GO:0009961 | Biological Process | response to 1-aminocyclopropane-1-carboxylic acid | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 615 aa Download sequence Send to blast |
MEDSQSQCHS HSHSHSHQYS QSSPLSSINE SSEQVKFASS DAAFSHNVSS AVGSNTGAKY 60 KLMSPAKLPI SRSSACITIP PGLSPSSFLE SPVLLSNIKA EPSPTTGSFA KFQLMQGSSG 120 SAAFSLMRSS SCGNVYGETT DEFEFKFAIG SSPTSGSLTK EAAVIAPGFN QPQSEPLIQV 180 QKRYLSQSSA PSALVESEMP NSKELSLPAP GSLDVSSIIT SAAAADNEEI NQRGQSNPSL 240 QGSHVDNKDV SSVTAERSSE DGYNWRKYGQ KLVKGSEFPR SYYKCTYPNC EVKKIFERSP 300 DGQITEIVYK GSHDHPKPQP SRRFTAGALT SIQEDRGERD ACLTGQEDKF NTDAQTSNTE 360 PSGTPLSPRQ ADDDGLEGTV SQLHSANDQM DEDDPFAKRR KMDGGMDITP VVKPIREPRV 420 VVQTVSEVDI LDDGYRWRKY GQKVVRGNPN PRSYYKCTNA GCPVRKHVER ASHDPKAVIT 480 TYEGKHNHDV PTARTNNHEM AGSVPVTGGS RVRTEENGSI SLDLGVGIGY GMENRRNGQL 540 HTLPAETVCN QVQVSSSSMM VVQPAAVAAC YNIVNGGISR FGTIENHVQG TGFETLPLQS 600 SAQCAQNYGR ILLGP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 4e-37 | 260 | 491 | 8 | 77 | Probable WRKY transcription factor 4 |
2lex_A | 4e-37 | 260 | 491 | 8 | 77 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00455 | DAP | Transfer from AT4G26640 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT013530 | 0.0 | BT013530.1 Lycopersicon esculentum clone 132248F, mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015061640.1 | 0.0 | probable WRKY transcription factor 20 | ||||
TrEMBL | M1CX70 | 0.0 | M1CX70_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400076670 | 0.0 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4025 | 23 | 44 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G26640.2 | 1e-154 | WRKY family protein |