PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sme2.5_02079.1_g00012.1

Organism

Solanum melongena

Taxonomic ID

4111

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum

Family

C2H2

Protein Properties

Length: 429aa MW: 47102.2 Da PI: 6.5527

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sme2.5_02079.1_g00012.1	genome	EGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.2	0.0012	56	81	1	23
EEET..TTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt.H 23 ++C +C ksF +k ++++Hi H Sme2.5_02079.1_g00012.1 56 FVCAapHCLKSFLNKTEFESHIHEvH 81 899999****************8877 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50157	9.224	56	82	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	58	81	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 429 aa Download sequence Send to blast
MIPSFFIDAS ILFPLPILFS YFVYRGYAAD GSIWGTISCD ERIQKIQTIR KLEGVFVCAA 60 PHCLKSFLNK TEFESHIHEV HSDLIHAEKD GNISESASAR KPAASESTVP APPRPVFSPS 120 SGSQVHDRED NALNSQTRDQ QPPRPLLQQK PSFTGSVQNH PLEQESNSNP PQGFERPGMQ 180 SWLPKQSFDA QGSLQSDPVH FPDKQQGIMG SSPFPEYPMH MPQPHGFAVP MSSNQTLAPQ 240 FGYSQFAPDG TQPFYGAASV EMPRPESTHE RGSEQGSLLG FPPGAAGNMN FPENYPRPWN 300 MGHLAGPFDP AAVQHPPDGF VNAADPRGRA VFFQGDHGRN ASVMPSNLPP PPSANRGLED 360 GQSSNSKDTR DSKGILMPQP MSLPPPPPLP HHMSRFQRGG RHYSGDRSHD GQGYGWQHEK 420 RDNFGSSQD

Sequence ? help Back to Top

Protein Sequence Length: 429 aa Download sequence Send to blast

MIPSFFIDAS ILFPLPILFS YFVYRGYAAD GSIWGTISCD ERIQKIQTIR KLEGVFVCAA  60
PHCLKSFLNK TEFESHIHEV HSDLIHAEKD GNISESASAR KPAASESTVP APPRPVFSPS  120
SGSQVHDRED NALNSQTRDQ QPPRPLLQQK PSFTGSVQNH PLEQESNSNP PQGFERPGMQ  180
SWLPKQSFDA QGSLQSDPVH FPDKQQGIMG SSPFPEYPMH MPQPHGFAVP MSSNQTLAPQ  240
FGYSQFAPDG TQPFYGAASV EMPRPESTHE RGSEQGSLLG FPPGAAGNMN FPENYPRPWN  300
MGHLAGPFDP AAVQHPPDGF VNAADPRGRA VFFQGDHGRN ASVMPSNLPP PPSANRGLED  360
GQSSNSKDTR DSKGILMPQP MSLPPPPPLP HHMSRFQRGG RHYSGDRSHD GQGYGWQHEK  420
RDNFGSSQD

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975521	3e-93	HG975521.1 Solanum lycopersicum chromosome ch09, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016542306.1	0.0	PREDICTED: E3 ubiquitin-protein ligase Hakai
TrEMBL	A0A2G3BKT2	0.0	A0A2G3BKT2_CAPCH; Uncharacterized protein
STRING	XP_009786415.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA6404	4	5