PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Sme2.5_02071.1_g00011.1

Organism

Solanum melongena

Taxonomic ID

4111

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum

Family

M-type_MADS

Protein Properties

Length: 104aa MW: 11814.8 Da PI: 10.5718

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sme2.5_02071.1_g00011.1	genome	EGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	37.2	3.7e-12	13	39	1	27
S---SHHHHHHHHHHHHHHHHHHHHHH CS SRF-TF 1 krienksnrqvtfskRrngilKKAeEL 27 k+ien+++r vtfskRr+g++KK EL Sme2.5_02071.1_g00011.1 13 KKIENDRRRMVTFSKRRQGLFKKNGEL 39 78*********************9998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	16.273	5	42	IPR002100	Transcription factor, MADS-box
SMART	SM00432	3.7E-5	5	46	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	1.44E-12	6	41	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	2.2E-10	7	27	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	2.0E-11	14	40	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	2.2E-10	27	42	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 104 aa Download sequence Send to blast
MATATGKKKI EIKKIENDRR RMVTFSKRRQ GLFKKNGELE SIAATPKKNV LRDWVEGIDV 60 EKCQNLNQLL LLKEQLEGTR KKLIEDAKSF EALFGCSAST SKTS

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006347862.1	8e-21	PREDICTED: agamous-like MADS-box protein AGL62
TrEMBL	A0A2G2W7Q2	8e-28	A0A2G2W7Q2_CAPBA; Agamous-like MADS-box protein AGL17
STRING	PGSC0003DMT400057855	3e-20	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2337	17	57