PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sme2.5_02071.1_g00010.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 157aa MW: 17748.3 Da PI: 10.5425 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 37.9 | 2.2e-12 | 12 | 59 | 2 | 49 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 +i n+ r+vtfskR+ g++ K e + L++ ++a ++fs++g+ ++y Sme2.5_02071.1_g00010.1 12 KITNEKSRSVTFSKRKRGLFRKNEQVESLTGSRIASVLFSPKGRPHTY 59 799******************************************999 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 5.6E-15 | 3 | 62 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 19.385 | 3 | 63 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 6.15E-15 | 4 | 67 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00120 | 1.46E-17 | 4 | 60 | No hit | No description |
PRINTS | PR00404 | 3.7E-12 | 5 | 25 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 6.1E-17 | 12 | 59 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.7E-12 | 25 | 40 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.7E-12 | 40 | 61 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 157 aa Download sequence Send to blast |
MDIGRKKIPI EKITNEKSRS VTFSKRKRGL FRKNEQVESL TGSRIASVLF SPKGRPHTYG 60 DVNFAIQRHF PSVKLSTSGV NFYYSNFDVV VATGKLASGS RSLSTPKRNS LRKWVEGIDV 120 EGCQNLNEFL LLKEQLKGTK EKMSSIEDAQ LFEAIFE |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016582225.1 | 4e-60 | PREDICTED: agamous-like MADS-box protein AGL61 | ||||
TrEMBL | A0A2G3BTU2 | 2e-59 | A0A2G3BTU2_CAPCH; Uncharacterized protein | ||||
STRING | PGSC0003DMT400057855 | 5e-50 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2337 | 17 | 57 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G24840.1 | 2e-14 | AGAMOUS-like 61 |