PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_02071.1_g00010.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family M-type_MADS
Protein Properties Length: 157aa    MW: 17748.3 Da    PI: 10.5425
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_02071.1_g00010.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF37.92.2e-121259249
                             ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
                   SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                             +i n+  r+vtfskR+ g++ K e +  L++ ++a ++fs++g+ ++y
  Sme2.5_02071.1_g00010.1 12 KITNEKSRSVTFSKRKRGLFRKNEQVESLTGSRIASVLFSPKGRPHTY 59
                             799******************************************999 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004325.6E-15362IPR002100Transcription factor, MADS-box
PROSITE profilePS5006619.385363IPR002100Transcription factor, MADS-box
SuperFamilySSF554556.15E-15467IPR002100Transcription factor, MADS-box
CDDcd001201.46E-17460No hitNo description
PRINTSPR004043.7E-12525IPR002100Transcription factor, MADS-box
PfamPF003196.1E-171259IPR002100Transcription factor, MADS-box
PRINTSPR004043.7E-122540IPR002100Transcription factor, MADS-box
PRINTSPR004043.7E-124061IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 157 aa     Download sequence    Send to blast
MDIGRKKIPI EKITNEKSRS VTFSKRKRGL FRKNEQVESL TGSRIASVLF SPKGRPHTYG  60
DVNFAIQRHF PSVKLSTSGV NFYYSNFDVV VATGKLASGS RSLSTPKRNS LRKWVEGIDV  120
EGCQNLNEFL LLKEQLKGTK EKMSSIEDAQ LFEAIFE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016582225.14e-60PREDICTED: agamous-like MADS-box protein AGL61
TrEMBLA0A2G3BTU22e-59A0A2G3BTU2_CAPCH; Uncharacterized protein
STRINGPGSC0003DMT4000578555e-50(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA23371757
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.12e-14AGAMOUS-like 61