PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_02071.1_g00009.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family M-type_MADS
Protein Properties Length: 199aa    MW: 21948.7 Da    PI: 8.0509
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_02071.1_g00009.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF54.81.2e-171258248
                             ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEE CS
                   SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklye 48
                             +i  ++ r vtfskRr+g++KKA+EL  +++ +va ++fs+tg+ly+
  Sme2.5_02071.1_g00009.1 12 KITKETSRMVTFSKRRKGLFKKAKELEFMTGSRVASVVFSPTGRLYT 58
                             688999****************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006621.614363IPR002100Transcription factor, MADS-box
SMARTSM004322.7E-20362IPR002100Transcription factor, MADS-box
CDDcd001201.12E-22458No hitNo description
SuperFamilySSF554553.66E-19466IPR002100Transcription factor, MADS-box
PRINTSPR004047.2E-15525IPR002100Transcription factor, MADS-box
PfamPF003193.4E-211258IPR002100Transcription factor, MADS-box
PRINTSPR004047.2E-152540IPR002100Transcription factor, MADS-box
PRINTSPR004047.2E-154061IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 199 aa     Download sequence    Send to blast
MGTGKKKIEI EKITKETSRM VTFSKRRKGL FKKAKELEFM TGSRVASVVF SPTGRLYTCG  60
DVNSAIMRHF SNSSKCTDPS PSELNFHDSS PDFVVVSGGS SEPSRSYSPP RRDSLRDSME  120
STDAEQYNSD VVGVVSGGSL GSRSSLTLRS NGLRNWVEGI DVEGCQNLNQ LLMLKEQLEG  180
TREKISSIED SELFQALFV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016582225.11e-74PREDICTED: agamous-like MADS-box protein AGL61
TrEMBLA0A2G2YZ406e-74A0A2G2YZ40_CAPAN; Uncharacterized protein
STRINGPGSC0003DMT4000578441e-57(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA23371757
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24540.11e-11AGAMOUS-like 24