PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sme2.5_02071.1_g00007.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 199aa MW: 21803.5 Da PI: 7.2933 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 48.9 | 8.2e-16 | 12 | 58 | 2 | 48 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklye 48 +i ++ r vtfskRr+g++ KA+EL +++ va ++fs+tg+ly+ Sme2.5_02071.1_g00007.1 12 KITKETSRMVTFSKRRKGLFRKAKELEFMTGSCVASVVFSPTGRLYT 58 688999****************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 20.268 | 3 | 63 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 4.7E-17 | 3 | 62 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00120 | 1.90E-20 | 4 | 58 | No hit | No description |
SuperFamily | SSF55455 | 1.57E-17 | 4 | 63 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.4E-13 | 5 | 25 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.5E-19 | 12 | 58 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.4E-13 | 25 | 40 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.4E-13 | 40 | 61 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 199 aa Download sequence Send to blast |
MGTAKKKIEI EKITKETSRM VTFSKRRKGL FRKAKELEFM TGSCVASVVF SPTGRLYTCG 60 DVNYAIMRHS LNSSKCTDPS PSGLNFHDSN PDFVVVSGGS SEPSRSYSPP RRDSLRDSVE 120 STDAEQYNSD VVGVVSGGSL GSRSSLTLRS NGLRNWVEGI DVEGCQNLNQ LLMLKEQLEG 180 TGEKISSIED SELFQALFV |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016582225.1 | 9e-70 | PREDICTED: agamous-like MADS-box protein AGL61 | ||||
TrEMBL | A0A1U8HFS7 | 2e-68 | A0A1U8HFS7_CAPAN; agamous-like MADS-box protein AGL61 | ||||
STRING | PGSC0003DMT400057844 | 5e-52 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2337 | 17 | 57 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G22540.2 | 1e-11 | MIKC_MADS family protein |