PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_02071.1_g00007.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family M-type_MADS
Protein Properties Length: 199aa    MW: 21803.5 Da    PI: 7.2933
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_02071.1_g00007.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF48.98.2e-161258248
                             ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEE CS
                   SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklye 48
                             +i  ++ r vtfskRr+g++ KA+EL  +++  va ++fs+tg+ly+
  Sme2.5_02071.1_g00007.1 12 KITKETSRMVTFSKRRKGLFRKAKELEFMTGSCVASVVFSPTGRLYT 58
                             688999****************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006620.268363IPR002100Transcription factor, MADS-box
SMARTSM004324.7E-17362IPR002100Transcription factor, MADS-box
CDDcd001201.90E-20458No hitNo description
SuperFamilySSF554551.57E-17463IPR002100Transcription factor, MADS-box
PRINTSPR004041.4E-13525IPR002100Transcription factor, MADS-box
PfamPF003192.5E-191258IPR002100Transcription factor, MADS-box
PRINTSPR004041.4E-132540IPR002100Transcription factor, MADS-box
PRINTSPR004041.4E-134061IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 199 aa     Download sequence    Send to blast
MGTAKKKIEI EKITKETSRM VTFSKRRKGL FRKAKELEFM TGSCVASVVF SPTGRLYTCG  60
DVNYAIMRHS LNSSKCTDPS PSGLNFHDSN PDFVVVSGGS SEPSRSYSPP RRDSLRDSVE  120
STDAEQYNSD VVGVVSGGSL GSRSSLTLRS NGLRNWVEGI DVEGCQNLNQ LLMLKEQLEG  180
TGEKISSIED SELFQALFV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016582225.19e-70PREDICTED: agamous-like MADS-box protein AGL61
TrEMBLA0A1U8HFS72e-68A0A1U8HFS7_CAPAN; agamous-like MADS-box protein AGL61
STRINGPGSC0003DMT4000578445e-52(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA23371757
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22540.21e-11MIKC_MADS family protein