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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
Back to Top |
| TF ID |
Sme2.5_02055.1_g00009.1 |
| Organism |
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| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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| Family |
GATA |
| Protein Properties |
Length: 253aa MW: 28132.5 Da PI: 7.5036 |
| Description |
GATA family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Sme2.5_02055.1_g00009.1 | genome | EGD | View CDS |
|
| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GATA | 58.7 | 7.5e-19 | 177 | 211 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
Cs+Cg+ kTplWR gp g+ktLCnaCG+++++ +l
Sme2.5_02055.1_g00009.1 177 CSHCGVQKTPLWRTGPLGEKTLCNACGVRFKSGRL 211
*******************************9986 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0007623 | Biological Process | circadian rhythm |
| GO:0009416 | Biological Process | response to light stimulus |
| GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0008270 | Molecular Function | zinc ion binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 253 aa
Download sequence Send
to blast |
MDYSGDDLFV NDLLDLSNGF PEDEGDENKP SPPQNKEDDK EKFPHIPPSV KQDFGTELSL 60
PGADLDNLEW LSHFVDDSFS EYSLTYSAGN LPEKSLKIHP NGQIPVRENS CFTGPFRAER 120
QKSSTRLWPP PVSFSSSSST TATNIRSQLS ESVENQPPAR KPKKKMEKRV GIGAKQCSHC 180
GVQKTPLWRT GPLGEKTLCN ACGVRFKSGR LLPEYRPASS PTFSTGLHSN SHRKVLEMRQ 240
KKETEPGLPV QGF
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