PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_02054.1_g00009.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family C3H
Protein Properties Length: 851aa    MW: 95295.4 Da    PI: 4.277
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_02054.1_g00009.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH18.73.2e-06338357525
                              --SGGGGTS--TTTTT-SS-S CS
                  zf-CCCH   5 lCrffartGtCkyGdrCkFaH 25 
                              +C ffa+ G+C  G++C+F H
  Sme2.5_02054.1_g00009.1 338 RCEFFAK-GWCIKGNSCRFLH 357
                              5******.************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.25.10.105.7E-448112IPR011989Armadillo-like helical
PROSITE profilePS5010313.432333360IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.44E-5334357IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 851 aa     Download sequence    Send to blast
MPSSGAAADP SIKSSSSISN SDEDDEYEED EYEEIEVEEE IEVEVEEEEE EEEEEEEEEE  60
EEVEEEEEEE VEVKGEGSVS VNVDDQEEEV EEEEEEVEEE EEEEEEEEEE EEIQGQESIP  120
LNVDNKKEEV EEEEIQGEEG KGRGSSLLNV DDQKEEDAKE EEEVQYEEGK GQGQGQGSSV  180
LNVDHQKDGT QVLEPLAVEQ LLRSGFSTQQ EPVVNLPQHT PLIEGSNDIC RISDSDGTRE  240
RIDGKRTHID SDGQASGFED GETNTDGIQP FGQELDAETL TDVSGKVAIG VQFSEGGDQE  300
VVDDLKQTSP RLDVLKTRQR SSSPVADSRG RSKRLAMRCE FFAKGWCIKG NSCRFLHIKD  360
HVTSHDKDGG LEETMIKSRL ADDKGLEESG KRSVLDGSSD SVQSAVQSGE YLKWRGDKEL  420
HMHTDGPSST PDVRRESPGC KLYLAGYSTS SSPLLRDGSL HKNILHDGKL SSVLLSANYR  480
NTVVSPYTSG LDDMNHKKNR SVFENHGLRA FNDSVDGLSH HCSSSRNVDA RDDQKLLDCS  540
QEYSSSRSTS LQYKSSAFPS SKTELSWIEL SRDTRYSSDY RTTASFDNWE PSVPFRPSFL  600
LSQMIGCPES LYDPIRDSID QSNVGDGPSK LSSSGKGGLV VTKHVWIKFF YYGTLCPEQS  660
SNKVPISGNI YHRDILPDNL SEKELSTNQT DTADTAVAHQ ENNTSSKEEK YSRSANLRGA  720
TKADKQLSTE LPRSRTQKKT QSESKRLRHG TEIDIDWKTE RSVNKESRVL KHFHAALVEF  780
VKELLKPTWS EGLMSKDAYK MIVKKTIDKV VNSFHPNQIP STAESITQYL DLSQPKLAKL  840
IEAYVEKYGK S
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754420.0HG975442.1 Solanum pennellii chromosome ch03, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006343225.10.0PREDICTED: protein FRIGIDA-ESSENTIAL 1-like isoform X1
RefseqXP_006343226.10.0PREDICTED: protein FRIGIDA-ESSENTIAL 1-like isoform X1
RefseqXP_006343227.10.0PREDICTED: protein FRIGIDA-ESSENTIAL 1-like isoform X1
TrEMBLA0A3Q7FFD80.0A0A3Q7FFD8_SOLLC; Uncharacterized protein
STRINGSolyc03g006350.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA30042122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33835.11e-21C3H family protein