PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sme2.5_01964.1_g00005.1

Organism

Solanum melongena

Taxonomic ID

4111

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum

Family

MYB_related

Protein Properties

Length: 959aa MW: 108033 Da PI: 5.7385

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sme2.5_01964.1_g00005.1	genome	EGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	35.1	3e-11	5	55	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqk 46 +++WT++E+ l+ +v+++G+g W tI + R+ ++k++w++ Sme2.5_01964.1_g00005.1 5 KQKWTPDEEAALKSGVRKHGPGKWQTILKDPEfsgllSSRSNVDLKDKWRN 55 79*********************************9**********9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	12.572	1	63	IPR017930	Myb domain
SuperFamily	SSF46689	9.36E-15	2	59	IPR009057	Homeodomain-like
SMART	SM00717	4.9E-8	4	59	IPR001005	SANT/Myb domain
Pfam	PF00249	1.3E-8	5	55	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	8.3E-14	5	56	IPR009057	Homeodomain-like
CDD	cd11660	5.12E-18	6	56	No hit	No description
SMART	SM00526	4.8E-16	117	182	IPR005818	Linker histone H1/H5, domain H15
SuperFamily	SSF46785	7.07E-17	117	195	IPR011991	Winged helix-turn-helix DNA-binding domain
PROSITE profile	PS51504	24.57	119	187	IPR005818	Linker histone H1/H5, domain H15
Gene3D	G3DSA:1.10.10.10	6.2E-15	121	188	IPR011991	Winged helix-turn-helix DNA-binding domain
Pfam	PF00538	5.9E-10	124	180	IPR005818	Linker histone H1/H5, domain H15
CDD	cd00073	5.71E-10	125	189	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006334	Biological Process	nucleosome assembly
GO:0009793	Biological Process	embryo development ending in seed dormancy
GO:0000786	Cellular Component	nucleosome
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 959 aa Download sequence Send to blast
MGAPKQKWTP DEEAALKSGV RKHGPGKWQT ILKDPEFSGL LSSRSNVDLK DKWRNMSVMA 60 NGYGSREKAR LALKRMNQVR KQDKRSLAVS TEDKSDEEMA EARVATISDS PQFGGSKRSI 120 LRLDNLIMEA ISNLKEPGGS SKTTIATYIE DQYWEPTNFK RLLSAKLKYL TATGRLIKMK 180 RKYRIAPAPV LSDRKIPSVP VLESRQRISS RVDQDDINIL TKAQVDLELT KMRSMTPQEA 240 AVAAAQAVAE AEVAIAEAED AAREADAAEA DAEAAQAFAE AAMKALQGRS TPRMPPEPPL 300 ASPECESVLS PARKEGNQQS VPRFLGFAAM DGNLNDNASL RARIKELERE RDELHKDIEQ 360 LCMQQTGSSY IGMPTRVPLH RIAGLEQEIE NLKKKLAACA RENQNLQEEL SEAYRIKGQL 420 ADLHSAEVSK NTEAEKQLKF FQGCVAAAFS ERDHAVMEAE KAKEKEELMS RGFHELQQRI 480 EELNCDLLEE KILTATLLSD MDGEKRLDEA FKEVVHKFYE IRQQSLEEDI EDVSWEDKCG 540 CLLHDSSEMW TFSNPEETST SKYIGLEIEN HLKKNVRALE KQKILSEEKL RAQISAFRHY 600 HSQHRLNITS LLDEGFSHIK SAMNMVEEKL KDCGTSEREI HSSQVNDLKF NELECQDVQI 660 NNDDGSDLIF KRNQPSLTTT VTVGNSDASK ALAAALNEKV ETLLLLSQQE ERHLLERNVH 720 AALQKKIEEL QRNLLQVTNE KVKALMELAQ LKQDYQLLQE KVNQVSRQGK FFGEIAVKRT 780 LQEKDGRLKN LLKTSYLRRW TGIQDSDGND VDTHRDSEAN FADRRPTNNM DIARMKIENA 840 TLKESLESME HLIRAVRRLR LSLLKFKESA ASEGIEHCSL ESLDNIINEA SQLKTALGTS 900 LPLSWSAEAD SGSFSKRVEE AIDNGHSSHE NVDFVSAAGF EMVELLVFVA QLLKECKCS

Sequence ? help Back to Top

Protein Sequence Length: 959 aa Download sequence Send to blast

MGAPKQKWTP DEEAALKSGV RKHGPGKWQT ILKDPEFSGL LSSRSNVDLK DKWRNMSVMA  60
NGYGSREKAR LALKRMNQVR KQDKRSLAVS TEDKSDEEMA EARVATISDS PQFGGSKRSI  120
LRLDNLIMEA ISNLKEPGGS SKTTIATYIE DQYWEPTNFK RLLSAKLKYL TATGRLIKMK  180
RKYRIAPAPV LSDRKIPSVP VLESRQRISS RVDQDDINIL TKAQVDLELT KMRSMTPQEA  240
AVAAAQAVAE AEVAIAEAED AAREADAAEA DAEAAQAFAE AAMKALQGRS TPRMPPEPPL  300
ASPECESVLS PARKEGNQQS VPRFLGFAAM DGNLNDNASL RARIKELERE RDELHKDIEQ  360
LCMQQTGSSY IGMPTRVPLH RIAGLEQEIE NLKKKLAACA RENQNLQEEL SEAYRIKGQL  420
ADLHSAEVSK NTEAEKQLKF FQGCVAAAFS ERDHAVMEAE KAKEKEELMS RGFHELQQRI  480
EELNCDLLEE KILTATLLSD MDGEKRLDEA FKEVVHKFYE IRQQSLEEDI EDVSWEDKCG  540
CLLHDSSEMW TFSNPEETST SKYIGLEIEN HLKKNVRALE KQKILSEEKL RAQISAFRHY  600
HSQHRLNITS LLDEGFSHIK SAMNMVEEKL KDCGTSEREI HSSQVNDLKF NELECQDVQI  660
NNDDGSDLIF KRNQPSLTTT VTVGNSDASK ALAAALNEKV ETLLLLSQQE ERHLLERNVH  720
AALQKKIEEL QRNLLQVTNE KVKALMELAQ LKQDYQLLQE KVNQVSRQGK FFGEIAVKRT  780
LQEKDGRLKN LLKTSYLRRW TGIQDSDGND VDTHRDSEAN FADRRPTNNM DIARMKIENA  840
TLKESLESME HLIRAVRRLR LSLLKFKESA ASEGIEHCSL ESLDNIINEA SQLKTALGTS  900
LPLSWSAEAD SGSFSKRVEE AIDNGHSSHE NVDFVSAAGF EMVELLVFVA QLLKECKCS

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC233135	1e-130	AC233135.4 Solanum lycopersicum strain Heinz 1706 chromosome 1 clone hba-92h13 map 1, complete sequence.
GenBank	HG975440	1e-130	HG975440.1 Solanum pennellii chromosome ch01, complete genome.
GenBank	HG975513	1e-130	HG975513.1 Solanum lycopersicum chromosome ch01, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016539422.1	0.0	PREDICTED: putative uncharacterized protein MYH16 isoform X2
Refseq	XP_016539423.1	0.0	PREDICTED: putative uncharacterized protein MYH16 isoform X2
TrEMBL	A0A2G3AVM6	0.0	A0A2G3AVM6_CAPCH; Telomere repeat-binding factor 2
STRING	XP_009606148.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA7683	4	4

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G49950.3	2e-86	telomere repeat binding factor 1