 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Sme2.5_01943.1_g00009.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
|
| Family |
NF-YC |
| Protein Properties |
Length: 181aa MW: 20513.8 Da PI: 10.7286 |
| Description |
NF-YC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Sme2.5_01943.1_g00009.1 | genome | EGD | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | NF-YC | 53.3 | 6.2e-17 | 58 | 143 | 14 | 98 |
NF-YC 14 tdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtd.ifdflvdivpr 98
++++ ++P++r+kki+k d+d+++i +ea l++ + +lf+ l+ +s a e+kr+t+k + av+r + + dfl+d p
Sme2.5_01943.1_g00009.1 58 GEIQQLQIPVSRVKKIMKLDQDINKINSEALHLIASSTQLFLELLAEKSAQVALEKKRKTIKLEHLRVAVKRHQpVSDFLLDSLPM 143
678999***********************************9999*************************9976488*****9986 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 181 aa
Download sequence Send
to blast |
MESTNFLQSW KAARQKLIPA KFRSLKSQCR LQLLSMSRVS TFDTMAEEDT EGNSTVAGEI 60
QQLQIPVSRV KKIMKLDQDI NKINSEALHL IASSTQLFLE LLAEKSAQVA LEKKRKTIKL 120
EHLRVAVKRH QPVSDFLLDS LPMSSHPADR SPKVQSRPRL STDKALPSGN RRIEAFFQKC 180
T
|
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | HG975517 | 1e-157 | HG975517.1 Solanum lycopersicum chromosome ch05, complete genome. |
