PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum

Family

HD-ZIP

Protein Properties

Length: 261aa MW: 29121.7 Da PI: 7.7848

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sme2.5_01937.1_g00009.1	genome	EGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	57.7	2e-18	116	170	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ ++tk+q Lee F+ +++++ +++++LA++l+L rqV vWFqNrRa+ k Sme2.5_01937.1_g00009.1 116 RKKLRLTKTQSALLEESFKIHSTLNPKQKQDLARELNLRPRQVEVWFQNRRARTK 170 788899***********************************************98 PP
2	HD-ZIP_I/II	124.2	6e-40	116	205	1	91
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekevee 86 +kk+rl+k q++lLEesF+ +++L+p++K++lareL+l+prqv+vWFqnrRARtk+kq+E+d+e+Lk+++++l++en+rL+ke +e Sme2.5_01937.1_g00009.1 116 RKKLRLTKTQSALLEESFKIHSTLNPKQKQDLARELNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETLTDENRRLHKELQE 201 69************************************************************************************ PP HD-ZIP_I/II 87 Lreel 91 L+ +l Sme2.5_01937.1_g00009.1 202 LK-AL 205 *9.44 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.21E-18	103	173	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	2.7E-17	106	166	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.491	112	172	IPR001356	Homeobox domain
SMART	SM00389	1.5E-15	114	176	IPR001356	Homeobox domain
CDD	cd00086	1.36E-16	116	173	No hit	No description
Pfam	PF00046	6.7E-16	116	170	IPR001356	Homeobox domain
PROSITE pattern	PS00027	0	147	170	IPR017970	Homeobox, conserved site
Pfam	PF02183	9.8E-11	172	206	IPR003106	Leucine zipper, homeobox-associated
SMART	SM00340	9.2E-25	172	215	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009735	Biological Process	response to cytokinin
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 261 aa Download sequence Send to blast
MGFDDICNTG LVLGLGFSST ADHKSSRKIT KGPSLGFEPS LTLSLISGDG TYEQPPIKDH 60 HEPADLYRQD SGGASSYSNA SVKRERDVGS EETTTEVERV SSRVISDEDD DGSNSRKKLR 120 LTKTQSALLE ESFKIHSTLN PKQKQDLARE LNLRPRQVEV WFQNRRARTK LKQTEVDCEF 180 LKKCCETLTD ENRRLHKELQ ELKALKIAQP LYMQLPAATL TMCPSCERIG GGVGENQSKN 240 AFTIAQKPHF FSPFNNPSAA C

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	114	120	SRKKLRL
2	164	172	RRARTKLKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00477	DAP	Transfer from AT4G37790	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EU998972	0.0	EU998972.1 Capsicum annuum homeodomain leucine-zipper 1 (HB1) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006363789.1	1e-165	PREDICTED: homeobox-leucine zipper protein HAT22-like
Swissprot	P46604	1e-96	HAT22_ARATH; Homeobox-leucine zipper protein HAT22
TrEMBL	A0A0V0HTW9	1e-164	A0A0V0HTW9_SOLCH; Putative homeobox-leucine zipper protein HAT22-like
TrEMBL	M1BXI9	1e-164	M1BXI9_SOLTU; Uncharacterized protein
STRING	PGSC0003DMT400055199	1e-165	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA290	24	186

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37790.1	1e-96	HD-ZIP family protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Liu T,Longhurst AD,Talavera-Rauh F,Hokin SA,Barton MK The Arabidopsis transcription factor ABIG1 relays ABA signaled growth inhibition and drought induced senescence. Elife, 2017. [PMID:27697148] Song L, et al. A transcription factor hierarchy defines an environmental stress response network. Science, 2017. [PMID:27811239]