PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Sme2.5_01876.1_g00001.1

Organism

Solanum melongena

Taxonomic ID

4111

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum

Family

NF-YC

Protein Properties

Length: 733aa MW: 84617 Da PI: 8.0372

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sme2.5_01876.1_g00001.1	genome	EGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	48.8	1.5e-15	580	628	52	100
NF-YC 52 elfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivprde 100 +fileltl swl +een+r+tl+k +++a+ rtd+f+fl+d+vp d+ Sme2.5_01876.1_g00001.1 580 SFFILELTLHSWLYSEENQRHTLQKDHLTSAIPRTDTFNFLLDVVPGDD 628 68********************************************886 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.70.270	4.9E-6	91	250	No hit	No description
SuperFamily	SSF56672	2.49E-34	142	256	No hit	No description
CDD	cd01647	3.91E-39	143	252	No hit	No description
Pfam	PF00078	6.2E-11	176	251	IPR000477	Reverse transcriptase domain
PROSITE profile	PS50994	12.917	273	428	IPR001584	Integrase, catalytic core
SuperFamily	SSF53098	1.1E-26	298	422	IPR012337	Ribonuclease H-like domain
Pfam	PF00665	7.4E-8	299	385	IPR001584	Integrase, catalytic core
Gene3D	G3DSA:3.30.420.10	1.7E-21	299	430	IPR012337	Ribonuclease H-like domain
Gene3D	G3DSA:1.10.20.10	1.3E-10	572	625	IPR009072	Histone-fold
SuperFamily	SSF47113	4.19E-9	573	625	IPR009072	Histone-fold

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0015074	Biological Process	DNA integration
GO:0003676	Molecular Function	nucleic acid binding
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 733 aa Download sequence Send to blast
MSSAALPAGS HKRGTTTGTI GGTNLLYAMG NLQDQETAPD VVTAWTDFMP VMPPLINGSA 60 SSLVKKGKEK QDQDPVLLQL KEVVHKQKMY HNLREVYWWN GMKKDIAEFV SWYPNCQYPA 120 LVTKLQVASQ LCMSRAYVLY CTGASSFSKI DLRWDYYQLK VTECDIPKTA FRTSLTNSPA 180 AFMDLTNKVF RLYLDMFVIV FIDDILVYSK DEEEHANHLR VVLQTLKDHE LYAKFLKCEF 240 WLKFVAFLGH VVLGDGKANI VADVLSKLFM GSTAHVEEGK KELAKEVHRL RLSIKGLRDK 300 MTKSAHFLAV KTTNTTEKYT KLYIHEIVRL HGVPLSIILD RGAQFTSQCW RSFQKGLGTK 360 VNLSTAFHPQ TDGQAKCIIQ TLEDMLRAFV LEFKGNWDNY FPFIEFDYNN SYHASIQMTF 420 YEALYGRRCR SSIGWFEVGK AELIGPDLVH QSMEKVKVIR ESLKTTQSHQ KSYTDVRKKD 480 LKFEVDDWMY LKVSPMKGVV RFGKKEKLSP RYIGPYQIVR RIEKVTYELD LSLVLDKIHL 540 VFHILMLKKC LRDLALAIPI ERMSIWSLLN HPFCLLILVS FFILELTLHS WLYSEENQRH 600 TLQKDHLTSA IPRTDTFNFL LDVVPGDDGD DITERSTTSC VPFDGSDIFY TWEILKDKED 660 IDPKSKFVIL KLIEKLNELE NLVESSQILA NKFEKLIRAS EEVDKPRDFN PEDNCLDMKL 720 RKLEEKVEKL KES

Sequence ? help Back to Top

Protein Sequence Length: 733 aa Download sequence Send to blast

MSSAALPAGS HKRGTTTGTI GGTNLLYAMG NLQDQETAPD VVTAWTDFMP VMPPLINGSA  60
SSLVKKGKEK QDQDPVLLQL KEVVHKQKMY HNLREVYWWN GMKKDIAEFV SWYPNCQYPA  120
LVTKLQVASQ LCMSRAYVLY CTGASSFSKI DLRWDYYQLK VTECDIPKTA FRTSLTNSPA  180
AFMDLTNKVF RLYLDMFVIV FIDDILVYSK DEEEHANHLR VVLQTLKDHE LYAKFLKCEF  240
WLKFVAFLGH VVLGDGKANI VADVLSKLFM GSTAHVEEGK KELAKEVHRL RLSIKGLRDK  300
MTKSAHFLAV KTTNTTEKYT KLYIHEIVRL HGVPLSIILD RGAQFTSQCW RSFQKGLGTK  360
VNLSTAFHPQ TDGQAKCIIQ TLEDMLRAFV LEFKGNWDNY FPFIEFDYNN SYHASIQMTF  420
YEALYGRRCR SSIGWFEVGK AELIGPDLVH QSMEKVKVIR ESLKTTQSHQ KSYTDVRKKD  480
LKFEVDDWMY LKVSPMKGVV RFGKKEKLSP RYIGPYQIVR RIEKVTYELD LSLVLDKIHL  540
VFHILMLKKC LRDLALAIPI ERMSIWSLLN HPFCLLILVS FFILELTLHS WLYSEENQRH  600
TLQKDHLTSA IPRTDTFNFL LDVVPGDDGD DITERSTTSC VPFDGSDIFY TWEILKDKED  660
IDPKSKFVIL KLIEKLNELE NLVESSQILA NKFEKLIRAS EEVDKPRDFN PEDNCLDMKL  720
RKLEEKVEKL KES

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022007202.1	1e-129	uncharacterized protein LOC110906365
TrEMBL	Q6L3S2	1e-126	Q6L3S2_SOLDE; Putative retrotransposon protein, identical
STRING	XP_004506381.1	1e-125	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1	2	7

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G48590.1	1e-10	nuclear factor Y, subunit C1