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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sme2.5_01874.1_g00008.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 216aa MW: 23832.6 Da PI: 5.202 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 72.8 | 2.9e-23 | 14 | 61 | 2 | 49 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 ri+n+snrqvtfskRr+g++KKA+E++++Cda a+++f+s++k y y Sme2.5_01874.1_g00008.1 14 RISNDSNRQVTFSKRRTGLFKKASEICTMCDATCAIVVFASNDKPYSY 61 8******************************************99988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 23.647 | 5 | 65 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 6.3E-28 | 5 | 64 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 3.27E-25 | 6 | 78 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.5E-18 | 7 | 27 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 4.0E-23 | 14 | 61 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.5E-18 | 27 | 42 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.5E-18 | 42 | 63 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 216 aa Download sequence Send to blast |
MRRPGGRRRL PMDRISNDSN RQVTFSKRRT GLFKKASEIC TMCDATCAIV VFASNDKPYS 60 YVHPSVELSI DRYLGVDPPV DANAAHPSVV AHRNASADRL NNKLNKLVKL HEDEKKYGKE 120 LKAMRKEPPN DELDLLSLTK LCEALEAADK EVERVVNHNK ELGIKYPYQT LGSAFAPLRA 180 EENILPDSDS DGDGLSDSDG NGDGDEGSSD SDEVVS |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006340409.1 | 2e-64 | PREDICTED: agamous-like MADS-box protein AGL62 | ||||
TrEMBL | M1DU30 | 5e-63 | M1DU30_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400094407 | 9e-64 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA204 | 24 | 223 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G24840.1 | 7e-26 | AGAMOUS-like 61 |