PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_01862.1_g00008.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family Trihelix
Protein Properties Length: 488aa    MW: 56036 Da    PI: 4.5436
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_01862.1_g00008.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix42.32e-13151235286
                 trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                              W+++e+  L++a   +  r +r++l+   W+ev++ +  + ++er+ +qC+++++ l+k+ykk+k    +    s+ +++yf++++
  Sme2.5_01862.1_g00008.1 151 WSEHETFILLDAWGTRFVRHGRKSLRSEEWQEVAEEVsCASKIERTDTQCRNRLDTLKKKYKKEKMKFAET-GSSTINWVYFKKMD 235
                              *************************************668899**********************999985.666669*******8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.121149208IPR017877Myb-like domain
PfamPF138371.1E-20150237No hitNo description
Gene3DG3DSA:1.10.10.603.1E-4151217IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 488 aa     Download sequence    Send to blast
MDDIEDNGRY PPNPYGMNQG YESSSRQKLP VHDTSYSRHV VNQYVEEVED DDNEEEEEEE  60
EEEEEEEEEE EEDDDDDDDG DENGVQRIGK DVFEDEDDDD EYGDSQRHQK KRKLKSLLSS  120
YELAPRVPPP STTAATAPKP TFGGRNPLSD WSEHETFILL DAWGTRFVRH GRKSLRSEEW  180
QEVAEEVSCA SKIERTDTQC RNRLDTLKKK YKKEKMKFAE TGSSTINWVY FKKMDMLLTS  240
TPQKAGVSCG MDSGEYVFMS PKAYLDRANG LDEMRDSPAN SESVDGSEDL PPKRSRNVQS  300
RGNGNGRSFK LIADSIHKFT EIYVKIENSK RQQMLELEKM RMDFHRELEL RKRQIVERAQ  360
AEIARIRQGT DEEYNMSAEN YSIAICGLEL TRVQSQERQS FLKIWESKLC IFLSPLELGS  420
SSIPQYTDTV VRIAIFHPKA AGAMVLKKEE EQGSLPSQIS RRWLATSQQI LMASSTLNHV  480
TSGVQLII
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754510.0HG975451.1 Solanum pennellii chromosome ch12, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006346580.10.0PREDICTED: trihelix transcription factor ASIL1-like
TrEMBLM1D3Q30.0M1D3Q3_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000805930.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA72302431
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24490.12e-65Trihelix family protein