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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sme2.5_01843.1_g00008.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | GRAS | ||||||||
Protein Properties | Length: 1030aa MW: 116146 Da PI: 6.7872 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 376.6 | 3.2e-115 | 656 | 1028 | 1 | 374 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklf 84 l++l+++cA+av+++d + a++lL+++++++sp gd +qRla++f+ +++arla+++s++ykal ++ts ++ l+a++l+ Sme2.5_01843.1_g00008.1 656 LRTLMITCAQAVAADDSRTANELLKQIRQHSSPFGDGNQRLAHCFADGIEARLAGTGSQIYKALVNKRTS---AADLLKAYHLY 736 57899***********************************************************999998...9********** PP GRAS 85 sevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLa 166 sP+ k+s ++ N++I+ +e+++rvH+iDf+i +G+QWp+++q +a+R++gpp+lRiTg++ p++g +e++eetg+rLa Sme2.5_01843.1_g00008.1 737 LASSPFRKISSFASNKTIMIKAENATRVHVIDFGILYGFQWPTFIQRIAEREGGPPRLRITGIEFPQPGfrPAEQIEETGHRLA 820 ********************************************************************9*************** PP GRAS 167 kfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhns 250 ++A++++vpfe+++ +ak++e++++e+L+++++E laVn+ ++ ++l+de+ ++es+r+ vL+l+++++P+++v+ + +++ Sme2.5_01843.1_g00008.1 821 DYARSFNVPFEYHA-IAKKWETITVEDLKLDKDEFLAVNCLYRFKNLHDETIAVESPRTVVLNLIRKINPDIFVHGIVNGAYSA 903 **************.7******************************************************************** PP GRAS 251 esFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsek.a 333 + F++rf eal ++salfd+le+ +pre er+ +Ere++gre+ nv+aceg er+er et+++W++r+ a F+++p++ + Sme2.5_01843.1_g00008.1 904 PFFVTRFREALFHFSALFDMLETVVPREIPERRLIEREIFGREALNVIACEGWERVERPETYRQWQARILGARFTQIPFDREeF 987 ******************************************************************************975414 PP GRAS 334 akqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 +++a +rk + + + ++e+s++l+lgWk+r+++++S+W+ Sme2.5_01843.1_g00008.1 988 VNKAVEKVRKGYHRDFVIDEDSQWLLLGWKGRTIYALSCWK 1028 566777777777688*************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 63.655 | 630 | 1007 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 1.1E-112 | 656 | 1028 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 1030 aa Download sequence Send to blast |
MAVVAFSLPQ VFANLSLKFP TSLTGCSRIQ RVRNIIDGKT LSFGVSCEML ELFGLLPLKG 60 SLSLYLKMKH HRHAMNDINS KGFLLANGAS EDNKILKFNY PGIEILVLKS GSWRENIKCQ 120 AGFEPFLSHP VDSFAFLHGA LHWLVQYEIF LWFHLVFQMK CTERYTLLEP MLEKDYGVKE 180 SWTQPIYMFA DGEVLLLNYR CIDQASCSAI GPPGDLVGLI ADGWCILWSR RLPEALVGLV 240 MDRLKLLQGL LWTASCGAAK PPEALAGLVR DSVTNRGLTS KTVEIVCFLL LGPYQSTRCP 300 AMPSDHLRLL SGSLRMGRYH KLQNGPRHEN CFVQHNFGAV GFMSGDHLRT NIESRTELCV 360 DDDFNEDIDF TDAVLSYINQ MLMEEDMEDK SDMLQESLEL QAKEKSLYEA LGKNYPPSPE 420 KNMFTDRNSE NPDDYFAGSI YNSTSNTGDG SGYLVDSRGV NMSTDCNSSY FEGLSFHNTS 480 YSSVCSSNSG SNVVDGFLDS PVSSFHIPST YDESQSILNF QKGVEEASKF LPTSNKLLNS 540 VDTNDLPPRE PKRQAGKAAA QMEEKDEGET SSTEARGKKN PLRGDNYIEE ERSSKQAAEF 600 DIVLLNSMGK GGEALEAYQK NLRNAKSKTT MQISKGSKGG KARGKKQGEK KEFIDLRTLM 660 ITCAQAVAAD DSRTANELLK QIRQHSSPFG DGNQRLAHCF ADGIEARLAG TGSQIYKALV 720 NKRTSAADLL KAYHLYLASS PFRKISSFAS NKTIMIKAEN ATRVHVIDFG ILYGFQWPTF 780 IQRIAEREGG PPRLRITGIE FPQPGFRPAE QIEETGHRLA DYARSFNVPF EYHAIAKKWE 840 TITVEDLKLD KDEFLAVNCL YRFKNLHDET IAVESPRTVV LNLIRKINPD IFVHGIVNGA 900 YSAPFFVTRF REALFHFSAL FDMLETVVPR EIPERRLIER EIFGREALNV IACEGWERVE 960 RPETYRQWQA RILGARFTQI PFDREEFVNK AVEKVRKGYH RDFVIDEDSQ WLLLGWKGRT 1020 IYALSCWKPV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_A | 2e-48 | 639 | 1029 | 1 | 379 | Protein SCARECROW |
5b3h_D | 2e-48 | 639 | 1029 | 1 | 379 | Protein SCARECROW |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975448 | 0.0 | HG975448.1 Solanum pennellii chromosome ch09, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006341017.1 | 0.0 | PREDICTED: scarecrow-like protein 9 | ||||
Swissprot | O80933 | 0.0 | SCL9_ARATH; Scarecrow-like protein 9 | ||||
TrEMBL | M1AHK3 | 0.0 | M1AHK3_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400022997 | 0.0 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA276 | 24 | 191 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G37650.1 | 0.0 | GRAS family protein |