PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum

Family

MYB_related

Protein Properties

Length: 88aa MW: 9828.89 Da PI: 10.0341

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sme2.5_01830.1_g00008.1	genome	EGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	31.6	3.9e-10	12	56	2	44
SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44 g+WT+ + + +a + + ++ +W+ +a+ +g g+t++q+k ++ Sme2.5_01830.1_g00008.1 12 GSWTAKQNKAFEKALAVYDKEtrdRWSNVAKAVG-GKTAEQVKRHY 56 89****************9*********.********9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	6.899	6	60	IPR017877	Myb-like domain
Gene3D	G3DSA:1.10.10.60	2.5E-6	7	61	IPR009057	Homeodomain-like
SMART	SM00717	5.1E-9	10	62	IPR001005	SANT/Myb domain
Pfam	PF00249	7.3E-8	12	56	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	1.64E-13	12	68	IPR009057	Homeodomain-like
CDD	cd00167	2.10E-7	14	60	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 88 aa Download sequence Send to blast
MSSMSSQHGS SGSWTAKQNK AFEKALAVYD KETRDRWSNV AKAVGGKTAE QVKRHYEILL 60 RDVFYIESGR IPFPKYNTTG GSHNSTSD

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2cjj_A	3e-36	4	82	1	79	RADIALIS
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Involved in the dorsovental asymmetry of flowers. Promotes dorsal identity. {ECO:0000269\|PubMed:15790677}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by both CYC and DICH. {ECO:0000269\|PubMed:15790677, ECO:0000269\|PubMed:16236768}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AJ277944	3e-83	AJ277944.1 Lycopersicon esculentum mRNA for SANT/MYB domain protein (fsm1 gene).
GenBank	AJ583670	3e-83	AJ583670.1 Lycopersicon esculentum fsm1 gene for SANT/MYB protein, exons 1-2.
GenBank	HG975522	3e-83	HG975522.1 Solanum lycopersicum chromosome ch10, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016557434.1	2e-56	PREDICTED: protein RADIALIS-like 1
Refseq	XP_016557439.1	2e-56	PREDICTED: protein RADIALIS-like 1
Swissprot	Q58FS3	5e-36	RAD_ANTMA; Transcription factor RADIALIS
TrEMBL	A0A1U8FNU6	4e-55	A0A1U8FNU6_CAPAN; Protein RADIALIS-like 6
TrEMBL	A0A1U8FNV2	4e-55	A0A1U8FNV2_CAPAN; protein RADIALIS-like 1
STRING	Solyc10g052470.1.1	8e-46	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA202	24	231

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G39250.1	5e-34	RAD-like 1

Publications ? help Back to Top
Corley SB,Carpenter R,Copsey L,Coen E Floral asymmetry involves an interplay between TCP and MYB transcription factors in Antirrhinum. Proc. Natl. Acad. Sci. U.S.A., 2005. 102(14): p. 5068-73 [PMID:15790677] Costa MM,Fox S,Hanna AI,Baxter C,Coen E Evolution of regulatory interactions controlling floral asymmetry. Development, 2005. 132(22): p. 5093-101 [PMID:16236768] Stevenson CE, et al. Crystallization and preliminary X-ray analysis of the RAD protein from Antirrhinum majus. Acta Crystallogr. Sect. F Struct. Biol. Cryst. Commun., 2005. 61(Pt 10): p. 885-8 [PMID:16511186] Stevenson CE, et al. Crystal structure of the MYB domain of the RAD transcription factor from Antirrhinum majus. Proteins, 2006. 65(4): p. 1041-5 [PMID:17044043]