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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sme2.5_01731.1_g00005.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | VOZ | ||||||||
Protein Properties | Length: 479aa MW: 53102 Da PI: 4.9854 | ||||||||
Description | VOZ family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | VOZ | 411.7 | 1.4e-126 | 203 | 422 | 1 | 217 |
VOZ 1 pppsaflgpkcalwdctrpaqgsewlq...dycssfhatlalneglpgttpvlrpkgidlkdgllfaalsakvqgkevgipecega 83 pppsaflgpkcalwdc+rpa gs+w+q dycs +ha+la eg +g p++rp g++lkd+llf+alsak+q+k+vg+pec+ga Sme2.5_01731.1_g00005.1 203 PPPSAFLGPKCALWDCPRPAMGSDWCQkshDYCSDYHAALAPTEGCLGRPPIVRPMGVGLKDNLLFQALSAKAQAKDVGVPECKGA 288 89***********************976668******************************************************* PP VOZ 84 atakspwnaaelfdlsllegetirewlffdkprrafesgnrkqrslpdysgrgwhesrkqvmkefgglkrsyymdpqpsssfewhl 169 atakspwna+elfdl+++egetirewlffdkprrafesgnrkqrslpdy+grgwhesrkqvm+++gglkrsyymdpqp++++ewhl Sme2.5_01731.1_g00005.1 289 ATAKSPWNAPELFDLEVVEGETIREWLFFDKPRRAFESGNRKQRSLPDYNGRGWHESRKQVMNDYGGLKRSYYMDPQPMKNLEWHL 374 ************************************************************************************** PP VOZ 170 yeyeineldalalyrlelklvdekksakgkvskdsladlqkklgrlta 217 yeyein++da alyrlelklvd+kks+kgkv+++s+adlqk++grl+a Sme2.5_01731.1_g00005.1 375 YEYEINKYDAWALYRLELKLVDGKKSPKGKVTNESVADLQKQMGRLSA 422 **********************************************97 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 479 aa Download sequence Send to blast |
MGKGSKSSAL FKDKAKNRVD DLQGMFINLQ SARKESRTYD AGVLEEQGGS RISSDLYRLL 60 LGEEEDDATS ALAAAKPEPD AQKHDVAGFQ EQGAILITEN LRREMLLMLA GAICVGSVEG 120 GIELFWDSMG FNAPPVLQQQ GYQLIDQCKS TPLVVNNAGI NNLGIGTQLD YQSFDLQQDF 180 DQFGFDALNL CLEDDLPPIQ ISPPPSAFLG PKCALWDCPR PAMGSDWCQK SHDYCSDYHA 240 ALAPTEGCLG RPPIVRPMGV GLKDNLLFQA LSAKAQAKDV GVPECKGAAT AKSPWNAPEL 300 FDLEVVEGET IREWLFFDKP RRAFESGNRK QRSLPDYNGR GWHESRKQVM NDYGGLKRSY 360 YMDPQPMKNL EWHLYEYEIN KYDAWALYRL ELKLVDGKKS PKGKVTNESV ADLQKQMGRL 420 SAEFPLENKR SVKGRGKANS KDVATNVPAA PNQTVPAIEG FDYVTSAPFP DYLGGYYIT |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator acting positively in the phytochrome B signaling pathway. Functions redundantly with VOZ2 to promote flowering downstream of phytochrome B (phyB). Down-regulates 'FLOWERING LOCUS C' (FLC) and up-regulates 'FLOWERING LOCUS T' (FT). Binds to the 38-bp cis-acting region of the AVP1 gene. Interacts with phyB in the cytoplasm and is translocated to the nucleus at signal transmission, where it is subjected to degradation in a phytochrome-dependent manner. {ECO:0000269|PubMed:15295067, ECO:0000269|PubMed:22904146}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By far-red light. {ECO:0000269|PubMed:22904146}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975514 | 0.0 | HG975514.1 Solanum lycopersicum chromosome ch02, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006364322.1 | 0.0 | PREDICTED: transcription factor VOZ1-like | ||||
Swissprot | Q9SGQ0 | 1e-162 | VOZ1_ARATH; Transcription factor VOZ1 | ||||
TrEMBL | M1D4F4 | 0.0 | M1D4F4_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400081241 | 0.0 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2818 | 24 | 54 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G28520.2 | 1e-158 | vascular plant one zinc finger protein |
Publications ? help Back to Top | |||
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