PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_01620.1_g00008.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family LBD
Protein Properties Length: 114aa    MW: 12711.8 Da    PI: 8.7287
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_01620.1_g00008.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260130.66.5e-4171061100
                   DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqq 86 
                              +CaaCk+lrrkC+++Cvlapyfp +qp+kf +vhk+FGa+nv kll+  +  +reda++sl+yeAe r+rdPvyG+vg+i+ l+ +
  Sme2.5_01620.1_g00008.1   7 PCAACKLLRRKCTQECVLAPYFPPDQPQKFSIVHKVFGAKNVGKLLNVFNAAQREDAVNSLAYEAEQRIRDPVYGCVGLISLLEYK 92 
                              7************************************************************************************* PP

                   DUF260  87 leqlkaelallkee 100
                              l+q++ ++  +k+e
  Sme2.5_01620.1_g00008.1  93 LKQVQDDMMNAKKE 106
                              ******99998876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089125.3976107IPR004883Lateral organ boundaries, LOB
PfamPF031955.2E-407104IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 114 aa     Download sequence    Send to blast
MSSTISPCAA CKLLRRKCTQ ECVLAPYFPP DQPQKFSIVH KVFGAKNVGK LLNVFNAAQR  60
EDAVNSLAYE AEQRIRDPVY GCVGLISLLE YKLKQVQDDM MNAKKELTAY IGPS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A4e-44611010114LOB family transfactor Ramosa2.1
5ly0_B4e-44611010114LOB family transfactor Ramosa2.1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtControls the proximal-distal patterning in petals and the adaxial-abaxial determination of leaves. Involved in the repression of the homeobox gene BP. {ECO:0000269|PubMed:12787254, ECO:0000269|PubMed:15821980}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009792980.12e-65PREDICTED: LOB domain-containing protein 36-like
RefseqXP_016501970.12e-65PREDICTED: LOB domain-containing protein 36-like
RefseqXP_019264646.12e-65PREDICTED: LOB domain-containing protein 36-like
RefseqXP_019264647.12e-65PREDICTED: LOB domain-containing protein 36-like
SwissprotQ9FKZ34e-60LBD36_ARATH; LOB domain-containing protein 36
TrEMBLA0A0V0GYD05e-65A0A0V0GYD0_SOLCH; Putative ovule protein (Fragment)
TrEMBLA0A1S4CLH75e-64A0A1S4CLH7_TOBAC; LOB domain-containing protein 36-like
TrEMBLA0A1U7Y2I15e-64A0A1U7Y2I1_NICSY; LOB domain-containing protein 36-like
TrEMBLA0A314L3T64e-64A0A314L3T6_NICAT; Lob domain-containing protein 36
STRINGXP_009792980.18e-65(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4324669
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66870.12e-62ASYMMETRIC LEAVES 2-like 1
Publications ? help Back to Top
  1. Kim M,Kim MJ,Pandey S,Kim J
    Expression and Protein Interaction Analyses Reveal Combinatorial Interactions of LBD Transcription Factors During Arabidopsis Pollen Development.
    Plant Cell Physiol., 2016. 57(11): p. 2291-2299
    [PMID:27519310]
  2. Wang Z,Wang Y,Kohalmi SE,Amyot L,Hannoufa A
    SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 2 controls floral organ development and plant fertility by activating ASYMMETRIC LEAVES 2 in Arabidopsis thaliana.
    Plant Mol. Biol., 2016. 92(6): p. 661-674
    [PMID:27605094]