PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_01601.1_g00008.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family C2H2
Protein Properties Length: 432aa    MW: 47985.5 Da    PI: 9.2675
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_01601.1_g00008.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.69.7e-05828323
                             ETTTTEEESSHHHHHHHHHHT CS
                  zf-C2H2  3 CpdCgksFsrksnLkrHirtH 23
                             C+ C+k F r  nL+ H r H
  Sme2.5_01601.1_g00008.1  8 CEVCNKGFQREQNLQLHRRGH 28
                             *******************88 PP
2zf-C2H212.60.0004383105123
                              EEETTTTEEESSHHHHHHHHHHT CS
                  zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                              ykC++C+k +  +s+ k H +t+
  Sme2.5_01601.1_g00008.1  83 YKCEKCSKKYAVHSDWKAHTKTC 105
                              9********************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.607.9E-6528IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.59E-7528No hitNo description
PROSITE profilePS5015710.97628IPR007087Zinc finger, C2H2
SMARTSM003550.025628IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280828IPR007087Zinc finger, C2H2
SMARTSM00355814878IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.608.7E-571104IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.59E-778103No hitNo description
SMARTSM003558183103IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 432 aa     Download sequence    Send to blast
MATNRFLCEV CNKGFQREQN LQLHRRGHNL PWKLKQKNTK EVAKRKVYVC PEPTCVHHEP  60
SRALGDLTGI KKHYFRKHGE KKYKCEKCSK KYAVHSDWKA HTKTCGTREY KCDCGTLFSR  120
RDSFITHRAF CDALIQENAR SIVQPSTLMN SLGMNNNQYL YGSGSNINIG SFSKLGSNDN  180
NITKTTTSNS GVHFDQHHDN NLIGSSTTCF LQQTNQDYNA NNNNIKPSMV HGLMQLPNLD  240
QNMNFFTNSG ILGDHNNISC SIPSLYGVQV LESRSTTCSA TGPIMSATAL LQKAAQMGSS  300
CTSNISTTAS LFKAFGSTSG GSSSSGKKSD HQAFNFGSEI TDGGFNAYEG GSHEGYNTTT  360
KLNFEQHQGP PQKKQLTRDF LGVGEIVRSM NGRFSTQREQ QQQNNGLNMM SSLLDPERNQ  420
IQQSFGSATN FQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C9e-3579156372Zinc finger protein JACKDAW
5b3h_F9e-3579156372Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that may act a transcriptional activator of nuclear-encoded photosynthetic gene expression (Probable). Binds DNA via its zinc fingers (PubMed:24821766). Recognizes and binds to SCL3 promoter sequence 5'-AGACAA-3' to promotes its expression when in complex with RGA (PubMed:24821766). {ECO:0000269|PubMed:24821766, ECO:0000305|PubMed:19726569}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by gibberellin. {ECO:0000305|PubMed:17933900}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754431e-169HG975443.1 Solanum pennellii chromosome ch04, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015071951.10.0protein indeterminate-domain 5, chloroplastic-like isoform X2
SwissprotQ8GYC11e-101IDD4_ARATH; Protein indeterminate-domain 4, chloroplastic
TrEMBLA0A3Q7FW430.0A0A3Q7FW43_SOLLC; Uncharacterized protein
TrEMBLM1CVT30.0M1CVT3_SOLTU; Uncharacterized protein
STRINGSolyc04g008500.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10324350
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02080.23e-82indeterminate(ID)-domain 4
Publications ? help Back to Top
  1. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]