PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sme2.5_01588.1_g00001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | C3H | ||||||||
Protein Properties | Length: 377aa MW: 42813.8 Da PI: 6.0096 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 26.6 | 1e-08 | 129 | 149 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 C++f++ G C++Gd C FaHg Sme2.5_01588.1_g00001.1 129 ACPDFRK-GNCNRGDACEFAHG 149 7******.*************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00356 | 2.4E-6 | 124 | 150 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.742 | 125 | 151 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 8.6E-7 | 129 | 149 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.3E-5 | 129 | 151 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 7.6 | 159 | 182 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 7.197 | 159 | 183 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 377 aa Download sequence Send to blast |
MIGERSRLFP TVDVPPWPYS DAQTANMQFM LSPSPNSIST PNYSTFVEDD YSPLFLQNDG 60 EEIDEFELEN REIELPVDVY ACDNFRMYEF KVKRCGRGRS HDWTECPYVH PGEKARRRDP 120 RKYHYSGTAC PDFRKGNCNR GDACEFAHGV FECWLHPGRY RTQPCKDGVN CKRRVCFFAH 180 SPEQLRVLTP GSGQSSDPFD NSPRRYVKSL QFLSSPESSS PPTESPPMSP MTAANSFNSS 240 LSRSLGSTSV NDVMASLRQL QLNRLNSMPS SSWNVQIGSP VLGSPRRPVI RPGFYSLPAT 300 PSGDPTRPRN RCFDLWDKGE CEEEPVMERV ESGRDLRVKM FERLSKENPL DTVDPDPNPN 360 PRPDPNPDVG WVSDLRI |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006353579.1 | 0.0 | PREDICTED: zinc finger CCCH domain-containing protein 20 | ||||
Swissprot | Q9M0G2 | 1e-121 | C3H49_ARATH; Zinc finger CCCH domain-containing protein 49 | ||||
TrEMBL | M0ZHL7 | 0.0 | M0ZHL7_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400000933 | 0.0 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1857 | 21 | 58 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G19810.1 | 2e-98 | C3H family protein |
Publications ? help Back to Top | |||
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