PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_01584.1_g00006.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family Trihelix
Protein Properties Length: 385aa    MW: 42858.6 Da    PI: 10.5887
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_01584.1_g00006.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix47.93.5e-1599189186
                 trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.....rergferspkqCkekwenlnkrykkikegekkrtsessstcpy 81 
                              +W++  +++Liea  ++  +l+rg+l+ ++Weev++++     + ++  r+ +qCk++++ l+k++k +++  ++   + +s +p+
  Sme2.5_01584.1_g00006.1  99 CWSEAATHTLIEAWGSRYLELNRGNLRHQHWEEVADAVnalhgHTKKQYRTDIQCKNRIDTLKKKFKIERAKVSQSPGRYVSAWPF 184
                              7*************************************999987778889**********************9999889999**** PP

                 trihelix  82 fdqle 86 
                              f++l+
  Sme2.5_01584.1_g00006.1 185 FNSLN 189
                              **997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138377.2E-2597191No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 385 aa     Download sequence    Send to blast
MFRRHNHTDN LSPISSSNPN SSNISHLSHS SAAVSHSGTM SDADDHLAPP FSNNNSPSQS  60
PSQSPSRSPP PCADNKLLTL PPPPSVSART PVFPAREDCW SEAATHTLIE AWGSRYLELN  120
RGNLRHQHWE EVADAVNALH GHTKKQYRTD IQCKNRIDTL KKKFKIERAK VSQSPGRYVS  180
AWPFFNSLNA LIGVGVKVPP AAATVPPQRR TPPTPVTSPL QWRAPPRELP PLQWRTPPQL  240
PSPLLSIPVG PRSKRPAAAM DYTVSRRNFS AMAAAAAAAS DDSDEEKESE TSSVAASAMA  300
IAACRSKRKR SGGLVEGYKM LAESIGKFSE IYERVEKAKQ RQMVELEKQR MQFAKDLEIQ  360
RMKLIMESQV HLEKLKRSKT QFRRW
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755190.0HG975519.1 Solanum lycopersicum chromosome ch07, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006348872.10.0PREDICTED: trihelix transcription factor ASIL2-like
TrEMBLM1BTN60.0M1BTN6_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000526070.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13182370
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58630.13e-42sequence-specific DNA binding transcription factors