PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Sme2.5_01584.1_g00006.1

Organism

Solanum melongena

Taxonomic ID

4111

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum

Family

Trihelix

Protein Properties

Length: 385aa MW: 42858.6 Da PI: 10.5887

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sme2.5_01584.1_g00006.1	genome	EGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	47.9	3.5e-15	99	189	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.....rergferspkqCkekwenlnkrykkikegekkrtsessstcpy 81 +W++ +++Liea ++ +l+rg+l+ ++Weev++++ + ++ r+ +qCk++++ l+k++k +++ ++ + +s +p+ Sme2.5_01584.1_g00006.1 99 CWSEAATHTLIEAWGSRYLELNRGNLRHQHWEEVADAVnalhgHTKKQYRTDIQCKNRIDTLKKKFKIERAKVSQSPGRYVSAWPF 184 7***********************************999987778889******************9999889999 PP trihelix 82 fdqle 86 f++l+ Sme2.5_01584.1_g00006.1 185 FNSLN 189 997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	7.2E-25	97	191	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 385 aa Download sequence Send to blast
MFRRHNHTDN LSPISSSNPN SSNISHLSHS SAAVSHSGTM SDADDHLAPP FSNNNSPSQS 60 PSQSPSRSPP PCADNKLLTL PPPPSVSART PVFPAREDCW SEAATHTLIE AWGSRYLELN 120 RGNLRHQHWE EVADAVNALH GHTKKQYRTD IQCKNRIDTL KKKFKIERAK VSQSPGRYVS 180 AWPFFNSLNA LIGVGVKVPP AAATVPPQRR TPPTPVTSPL QWRAPPRELP PLQWRTPPQL 240 PSPLLSIPVG PRSKRPAAAM DYTVSRRNFS AMAAAAAAAS DDSDEEKESE TSSVAASAMA 300 IAACRSKRKR SGGLVEGYKM LAESIGKFSE IYERVEKAKQ RQMVELEKQR MQFAKDLEIQ 360 RMKLIMESQV HLEKLKRSKT QFRRW

Sequence ? help Back to Top

Protein Sequence Length: 385 aa Download sequence Send to blast

MFRRHNHTDN LSPISSSNPN SSNISHLSHS SAAVSHSGTM SDADDHLAPP FSNNNSPSQS  60
PSQSPSRSPP PCADNKLLTL PPPPSVSART PVFPAREDCW SEAATHTLIE AWGSRYLELN  120
RGNLRHQHWE EVADAVNALH GHTKKQYRTD IQCKNRIDTL KKKFKIERAK VSQSPGRYVS  180
AWPFFNSLNA LIGVGVKVPP AAATVPPQRR TPPTPVTSPL QWRAPPRELP PLQWRTPPQL  240
PSPLLSIPVG PRSKRPAAAM DYTVSRRNFS AMAAAAAAAS DDSDEEKESE TSSVAASAMA  300
IAACRSKRKR SGGLVEGYKM LAESIGKFSE IYERVEKAKQ RQMVELEKQR MQFAKDLEIQ  360
RMKLIMESQV HLEKLKRSKT QFRRW

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975519	0.0	HG975519.1 Solanum lycopersicum chromosome ch07, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006348872.1	0.0	PREDICTED: trihelix transcription factor ASIL2-like
TrEMBL	M1BTN6	0.0	M1BTN6_SOLTU; Uncharacterized protein
STRING	PGSC0003DMT400052607	0.0	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1318	23	70

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G58630.1	3e-42	sequence-specific DNA binding transcription factors