PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_01556.1_g00008.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family NF-YA
Protein Properties Length: 316aa    MW: 34595.6 Da    PI: 9.4771
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_01556.1_g00008.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA100.12.2e-31156212158
                CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                              +ep+YVNaKQy++Il+RRq Rak+e e+k  +k rkpylheSRhkhA+rR+RgsgGrF
  Sme2.5_01556.1_g00008.1 156 EEPVYVNAKQYHGILRRRQIRAKAELERKA-IKVRKPYLHESRHKHAMRRARGSGGRF 212
                              69***************************9.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005211.0E-35154215IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115237.841155215IPR001289Nuclear transcription factor Y subunit A
PfamPF020454.3E-27157212IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006162.0E-24158180IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860160180IPR018362CCAAT-binding factor, conserved site
PRINTSPR006162.0E-24189212IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 316 aa     Download sequence    Send to blast
MPTIAKHDGR QLETGLQITS QSTTQMQPWW QGFGDNTMPF ASENAVAQGK SVGGIEEKEA  60
KALAMESGSD GNNEQYKQHL KHFAPTTAAI MAEQQKELTV HYILKDLSSN LLLQMLTSYP  120
YPDMHYGGMM TYGAPVHPHL FEVHHARMPL SLDMEEEPVY VNAKQYHGIL RRRQIRAKAE  180
LERKAIKVRK PYLHESRHKH AMRRARGSGG RFLNTKKLNG MDCTQEEAKK YGGATVPTHS  240
GNSSGSGSSD QGGKEGSTVQ DMQKGQSHSF STGNSHGSSV YFAQSTGSEL GNGGHYGRGS  300
WSLLVNQASS GAASSN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A7e-20156216262NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1196205RHKHAMRRAR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754401e-126HG975440.1 Solanum pennellii chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006345444.10.0PREDICTED: nuclear transcription factor Y subunit A-7-like isoform X1
TrEMBLM1A9B50.0M1A9B5_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000176980.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA112322025
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12840.47e-37nuclear factor Y, subunit A1