PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_01547.1_g00008.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family BES1
Protein Properties Length: 734aa    MW: 82066.5 Da    PI: 5.4313
Description BES1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_01547.1_g00008.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF8221389.4e-43691701106
                   DUF822   1 ggsgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpleeaeaagssa 86 
                              ggs+r ++ +E+E++k+RER+RRai+aki+aGLR++Gny+l++raD+n+V++AL+reAGwvv +DGtt++  s+p+ +  a+g  +
  Sme2.5_01547.1_g00008.1  69 GGSRRCRPLEEKERTKLRERQRRAITAKILAGLRRHGNYNLRVRADINDVIAALAREAGWVVLPDGTTFPSRSQPQGTGTAGGIPT 154
                              6899************************************************************************9999988888 PP

                   DUF822  87 saspesslqsslkssalasp 106
                              ++ ++ss+     s ++++p
  Sme2.5_01547.1_g00008.1 155 TMVTSSSSY----SPTQHTP 170
                              866666544....2222222 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF056879.6E-3870189IPR008540BES1/BZR1 plant transcription factor, N-terminal
SuperFamilySSF514455.04E-153251612IPR017853Glycoside hydrolase superfamily
Gene3DG3DSA:3.20.20.801.0E-170254612IPR013781Glycoside hydrolase, catalytic domain
PfamPF013734.8E-96260596IPR001554Glycoside hydrolase, family 14
PRINTSPR007505.1E-62291305IPR001554Glycoside hydrolase, family 14
PRINTSPR007505.1E-62312330IPR001554Glycoside hydrolase, family 14
PRINTSPR007505.1E-62334355IPR001554Glycoside hydrolase, family 14
PRINTSPR007505.1E-62427449IPR001554Glycoside hydrolase, family 14
PRINTSPR007505.1E-62500519IPR001554Glycoside hydrolase, family 14
PRINTSPR007505.1E-62534550IPR001554Glycoside hydrolase, family 14
PRINTSPR007505.1E-62551562IPR001554Glycoside hydrolase, family 14
PRINTSPR007505.1E-62569592IPR001554Glycoside hydrolase, family 14
SuperFamilySSF514451.16E-17641728IPR017853Glycoside hydrolase superfamily
Gene3DG3DSA:3.20.20.803.8E-17644728IPR013781Glycoside hydrolase, catalytic domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000272Biological Processpolysaccharide catabolic process
GO:0048831Biological Processregulation of shoot system development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0016161Molecular Functionbeta-amylase activity
Sequence ? help Back to Top
Protein Sequence    Length: 734 aa     Download sequence    Send to blast
MASEMQRYDT NEDDEEMGMD VKEEDDEDED DEVKNAAMHS IAGFDGGHGS SGINRFQPHQ  60
QYQEQPTPGG SRRCRPLEEK ERTKLRERQR RAITAKILAG LRRHGNYNLR VRADINDVIA  120
ALAREAGWVV LPDGTTFPSR SQPQGTGTAG GIPTTMVTSS SSYSPTQHTP PVSLKGVPSG  180
FQNTDDQSAR QMRSGFVPTS PYDSSFTARS QTSAMVADGQ EIQNDPFLVG SLDSINKQVV  240
DVHTKLQERE FAGTPYIPVY VMLPLGVINM KSELVDADGL VKQLSVLKLI NIDGVMVDCW  300
WGIVEANAPQ DYNWNGYKRL FQIVREHKLK IKVVMSFHEC GGNIGDDVCI PLPHWISEIG  360
RSNPDIYFTD REGRRNPECL SWGIDKERVL RGRTAVEVYF DYMRSFRVEF DEFFEDGIIS  420
LVEVGLGPCG ELRYPSNPVK HGWRYPGVGE FQCYDRYLLN SLRKAAEARG HSFWARGPDN  480
AGSYNSRPQE TGFFCDGGDY DGYYGRFFLN WYSQVMIDHA DRVLSLAKLA FDGTCIAAKL  540
SGIHWWYKTA SHAAELTAGF YNPNNRDGYV VIAAMLKKHG AALNFKCAEM SMLEQAVDFC  600
EALGDPEGLA WQPCVPPCAP SQEKPVSPLS AALRTIMLTA SLVSLPLNIS LQVLNVAWDV  660
SLPVCSENAL PCHDRGGYNC LLEKAKPQND PDGKHIFAFT YLRLSPLLMD GQNHMEFERF  720
VKRMHGEAVL EFPS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1bfn_A1e-14325672711444BETA-AMYLASE
1q6c_A1e-14325672711444beta-amylase
1wdp_A1e-14325672711444Beta-amylase
1wdr_A1e-14325672711444Beta-amylase
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754400.0HG975440.1 Solanum pennellii chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015059070.10.0beta-amylase 7 isoform X3
SwissprotO808310.0BAM7_ARATH; Beta-amylase 7
TrEMBLA0A3Q7EKY00.0A0A3Q7EKY0_SOLLC; Beta-amylase
STRINGSolyc01g094580.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA16072448
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45880.10.0beta-amylase 7
Publications ? help Back to Top
  1. Soyk S, et al.
    The Enzyme-Like Domain of Arabidopsis Nuclear β-Amylases Is Critical for DNA Sequence Recognition and Transcriptional Activation.
    Plant Cell, 2014. 26(4): p. 1746-1763
    [PMID:24748042]