PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sme2.5_01509.1_g00006.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | G2-like | ||||||||
Protein Properties | Length: 619aa MW: 67945.4 Da PI: 4.9144 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 105.4 | 3.2e-33 | 246 | 300 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+r+rWtpeLHe+Fveav++LGGsekAtPk +l+lmkv+ Lt++hvkSHLQkYR+ Sme2.5_01509.1_g00006.1 246 KQRMRWTPELHEAFVEAVNKLGGSEKATPKGVLKLMKVETLTIYHVKSHLQKYRT 300 79****************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 12.98 | 243 | 303 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 5.02E-18 | 244 | 300 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 5.3E-31 | 244 | 302 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 4.1E-25 | 246 | 300 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 3.9E-10 | 248 | 299 | IPR001005 | SANT/Myb domain |
Pfam | PF14379 | 5.3E-8 | 331 | 352 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Pfam | PF14379 | 9.6E-10 | 508 | 533 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 619 aa Download sequence Send to blast |
MEARPALSVQ RTGAHQLSNF GASGAHSSLP VLQTSLEEKY PKLPGPVLSS FPSNDGAVSH 60 LFSSSSGFST NLHFSSVPAH EEHLAPATSI SQPTTNEASI PLANSGVLQC AASSQYADVN 120 SEPWFTELLP DYLDYPINTP VQNSQLDCRN TGECHIPPED LSKQSDWPEW ADLVMNDDDA 180 LTSNWNEVNF DTSIADAEPK MQYQEQNQPS NFPVHQVQSL QQIPTASVET SAVVPASSSA 240 SGSSSKQRMR WTPELHEAFV EAVNKLGGSE KATPKGVLKL MKVETLTIYH VKSHLQKYRT 300 ARYKPEASEG SSEKKESSIG NLSALDLKTG IEITEALRLQ MEVQKQLHEQ LEEDSLSCII 360 LLEIDSGCCL FGIKWLLGMA SSLLPFVFFP LYLHKVGHRI IVVFLSIKDM LTTICKLEYS 420 PPLLLAFASS SPDPATQQYL PSQTSPLDYQ PYKTFDHGWC LACPDMSPPS QSEALPSSQF 480 LPIELVNCEP SIPKSVPMRL YGLSTRPIQR NLQLRIEEQG RCLQMMFEKQ CKSMPGIDLA 540 KGSSSMAEDA SAQLTDAVQS SSNKNDPGVS LVDHQEAGSY TTQKVGEKQK EQERDLGNPE 600 TNITSSSNSP PLKRAKVNE |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 2e-31 | 246 | 304 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 2e-31 | 246 | 304 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 2e-31 | 246 | 304 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 2e-31 | 246 | 304 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 2e-31 | 246 | 304 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 2e-31 | 246 | 304 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 2e-31 | 246 | 304 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 2e-31 | 246 | 304 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB017693 | 0.0 | AB017693.1 Nicotiana tabacum WERBP-1 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006364564.1 | 0.0 | PREDICTED: protein PHR1-LIKE 1 | ||||
TrEMBL | A0A0V0IJ68 | 0.0 | A0A0V0IJ68_SOLCH; Uncharacterized protein | ||||
STRING | Solyc06g008200.2.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2753 | 23 | 49 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G28610.1 | 1e-52 | phosphate starvation response 1 |