PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_01478.1_g00002.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family B3
Protein Properties Length: 440aa    MW: 49045.3 Da    PI: 7.1202
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_01478.1_g00002.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B346.46.9e-1579169199
                              EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
                       B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                              f+k ++ps+v+   +l++pk+f + h ++k+    ++l de+ ++   k+ ++k++    l++GW++F  a+ L egD++vF+l++
  Sme2.5_01478.1_g00002.1  79 FVKYMLPSHVSGGFWLSFPKNFSACH-LPKHD-DAVVLVDENDEESATKYLVEKNG----LSGGWRGFSIAHSLVEGDVLVFQLIQ 158
                              8999******************9555.55544.48***************777777....*************************9 PP

                              SSEE..EEEEE-S CS
                       B3  87 rsefelvvkvfrk 99 
                               s+f  +v ++rk
  Sme2.5_01478.1_g00002.1 159 PSKF--KVYIIRK 169
                              9999..9999987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.1E-2373171IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.106.0E-2073171IPR015300DNA-binding pseudobarrel domain
CDDcd100172.26E-2377168No hitNo description
SMARTSM010192.9E-2179170IPR003340B3 DNA binding domain
PROSITE profilePS5086311.50579170IPR003340B3 DNA binding domain
PfamPF023622.5E-1379170IPR003340B3 DNA binding domain
PfamPF052661.3E-8318426IPR007930Protein of unknown function DUF724
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 440 aa     Download sequence    Send to blast
MAISSLYSSK KSPALSSSKK KALEFKKRAL RKVLSGDKKK VKICVEKKAQ KHRSVDANSS  60
AMLRAAEVQA NLPPHFPSFV KYMLPSHVSG GFWLSFPKNF SACHLPKHDD AVVLVDENDE  120
ESATKYLVEK NGLSGGWRGF SIAHSLVEGD VLVFQLIQPS KFKVYIIRKN CLTEIDGAIS  180
LLNLDFRARP IEFDHDEEMK ICEAKEEKYL EPPVLDINQG DKNEEAMLLP NSDHGPVTDQ  240
CGNDSDNGSE LLEGIRFSES RVEFKDVKDY SGFSILVDGL IIDSEVPALH IRTKYYDLCR  300
SQNSFLHDHL LGGLNVKLAA GMITETVNIA DAIRACKIST PRNYLETWDN TLKGFECLGM  360
NVGFLRARLS KLVSLSHGSG NVLASKKVEL AEAKEEMRIL EEKVLKVKEL IKNVDSAIEA  420
LTKKDANFDL EFRALAAAPW
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754450.0HG975445.1 Solanum pennellii chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015077156.10.0B3 domain-containing protein Os01g0234100-like
TrEMBLM1BY600.0M1BY60_SOLTU; Uncharacterized protein
STRINGSolyc06g034140.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA30232343
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19184.15e-39B3 family protein