PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_01455.1_g00005.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family B3
Protein Properties Length: 372aa    MW: 44034.1 Da    PI: 4.9147
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_01455.1_g00005.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B334.53.5e-112823581088
                              HHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.S CS
                       B3  10 vlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.s 88 
                              + ++++l++p + +++++++   +  +t++d+ gr+++ k++ +k  gr++lt+GW++ ++ n ++  D ++ ++++   
  Sme2.5_01455.1_g00005.1 282 AKRRDQLYIPIDVLRDYKLE--LPSSMTIRDSAGREFDTKIKKWKD-GRIWLTGGWRSLCRWNLVEKDDRCICEFVRGrG 358
                              56789************988..55569999***********87777.589**********************99875423 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019364.71E-1477165IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.108.9E-1477177IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508638.45981180IPR003340B3 DNA binding domain
CDDcd100173.68E-682177No hitNo description
SMARTSM010190.1584180IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.104.7E-16269369IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.88E-16269356IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.08273372IPR003340B3 DNA binding domain
CDDcd100173.95E-8274359No hitNo description
SMARTSM010193.8E-5276372IPR003340B3 DNA binding domain
PfamPF023621.4E-9283359IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 372 aa     Download sequence    Send to blast
MGEASRSKRR YVEETEEEYE DEEEEEEEEE EEEEENERPN TYKKKVSLSK AGYKRAATHK  60
DRHDQFRSDI FKSGRATQPK NPYFIAKIRA KRRDQLYVPI DVMKDFNFEL PSSMTIRDSI  120
GREFETKLKN WKDGRIWLIG GWHSFCRWNL VEKDVRCICE FVKGKGKKGL YLQVQILHDG  180
SVSNPNEKDM EEEEEEEEEE DDDDDDEEEE ETEEEEEEEN ERAGTFKKKA PRSKVNFLDL  240
AGCKRVTTCT VRDVPDQYGA DIFKSGRATQ PKNPYFVAKI RAKRRDQLYI PIDVLRDYKL  300
ELPSSMTIRD SAGREFDTKI KKWKDGRIWL TGGWRSLCRW NLVEKDDRCI CEFVRGRGKR  360
GIYLQVQVLH SE
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1162168KGKGKKG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2384994e-83AC238499.2 Solanum lycopersicum strain Heinz 1706 chromosome 1 clone hba-8l19 map 1, complete sequence.
GenBankHG9755134e-83HG975513.1 Solanum lycopersicum chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015163791.11e-173PREDICTED: glutamic acid-rich protein-like
TrEMBLM1CFK71e-171M1CFK7_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000664701e-172(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10912264
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60140.13e-12B3 family protein