PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_01441.1_g00020.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family Trihelix
Protein Properties Length: 175aa    MW: 19858.2 Da    PI: 4.517
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_01441.1_g00020.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix30.59.4e-101885269
                 trihelix  2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegek 69
                             Wt +e l+L++  + ++ + +++ +  ++W++  +++ + g++rs +qCk +w+++  +y k+k +e+
  Sme2.5_01441.1_g00020.1 18 WTLHESLTLVNEMKATQIECGNTLASFQKWQSTVQNCNSLGVNRSLNQCKRRWDSMLEQYNKVKPWES 85
                             ****************************************************************9997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138374.6E-91793No hitNo description
PROSITE profilePS500906.5741874IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009506Cellular Componentplasmodesma
Sequence ? help Back to Top
Protein Sequence    Length: 175 aa     Download sequence    Send to blast
MERTGGSLRT RSQAAPDWTL HESLTLVNEM KATQIECGNT LASFQKWQST VQNCNSLGVN  60
RSLNQCKRRW DSMLEQYNKV KPWESAYWTV FDEERKRELD LPEQFDFELF NAIARYLNLQ  120
GGDGGGAETD PDTDPEAQQA QGNNAFLEIG ITSVLINFEF LVSQKYGFLG CLCKA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0109441e-175AP010944.1 Solanum lycopersicum DNA, chromosome 8, clone: C08SLm0007C12, complete sequence.
GenBankHG9755201e-175HG975520.1 Solanum lycopersicum chromosome ch08, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006355199.11e-102PREDICTED: trihelix transcription factor ASR3
TrEMBLA0A0V0HTQ81e-100A0A0V0HTQ8_SOLCH; Putative ovule protein
STRINGPGSC0003DMT4000759811e-101(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA83602124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31270.16e-43sequence-specific DNA binding transcription factors